adiezsanchez

100-days-of-code-Python

This is just a practice repository to keep track of most of the projects I built during the 100 Days of Code course.

adiezsanchez

Config files for my GitHub profile.

argolight_nikon_qc

Simple scripts to check xy alignment and dual cam colocalization in the Nikon Crestoptics V3 system at CMIC@NTNU

bf_intorg_YOLOv8_dev

Bio-image_Analysis_with_Python_2023

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

biofilm_meas

intestinal_organoid_brightfield_analysis

Tools to analyze intestinal organoid imaging at the Martin-Alonso/Oudhoff lab

intestinal_organoid_yolov8

Tools to analyze intestinal organoid imaging at the Martin-Alonso/Oudhoff lab using AI

microglia_dna_damage

Python script to analyze DNA damage in microglial cells

nuclear_translocation_3D

Checking nuclear translocation of proteins using Voronoi-Otsu labeling and label erosion from pyclesperanto

adiezsanchez/intestinal_organoid_brightfield_analysis

Tools to analyze intestinal organoid imaging at the Martin-Alonso/Oudhoff lab

adiezsanchez/nuclear_translocation_3D

Checking nuclear translocation of proteins using Voronoi-Otsu labeling and label erosion from pyclesperanto

adiezsanchez/100-days-of-code-Python

This is just a practice repository to keep track of most of the projects I built during the 100 Days of Code course.

adiezsanchez/adiezsanchez

Config files for my GitHub profile.

adiezsanchez/bf_intorg_YOLOv8_dev

adiezsanchez/Bio-image_Analysis_with_Python_2023

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

adiezsanchez/biofilm_meas

adiezsanchez/colon_organoid_bf

Analysis of brighfield images of colonoids growing in Matrigel droplets to extract morphological features and object counts.

adiezsanchez/intestinal_organoid_yolov8

Tools to analyze intestinal organoid imaging at the Martin-Alonso/Oudhoff lab using AI

adiezsanchez/microglia_dna_damage

Python script to analyze DNA damage in microglial cells

adiezsanchez/CV-models-roboflow-2023

Examples and tutorials on using SOTA computer vision models and techniques. Learn everything from old-school ResNet, through YOLO and object-detection transformers like DETR, to the latest models like Grounding DINO and SAM.

adiezsanchez/EMBL-deep-learning-2023

Solutions to the webinar part of the 2023 EMBL Deep Learning for image analysis course.

adiezsanchez/EMBO-2023-bash-OME

Advanced methods in bioimage analysis bash OME

adiezsanchez/handson-ml3

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

adiezsanchez/LSM_Zeiss_MIP

Quick Jupyter notebook to go through folders containing .lsm files and performing a maximum intensity projection of the third fluorescent channel.

adiezsanchez/napari-training-course

Lectures for a napari training course

adiezsanchez/neubias_academy_biapy

NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter

adiezsanchez/nuclear_translocation_2D

Measuring intensity of two marker proteins inside the nucleus

adiezsanchez/PDAC_organoids_caspase

adiezsanchez/Python-for-Bioimage-Analysis-RMS-DAIM

This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.

adiezsanchez/RNASeq-TPM-plotter

Collection of scripts to plot TPMs (Transcripts per Million) gene expression data from .csv RNASeq-derived files. Optimized for Google Collab.

adiezsanchez/tutorial-scipy2021-bioimage-analysis-fundamentals

Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python

adiezsanchez/UNet_SemSeg_healthy_tumor_SRs

Semantic segmentation of healthy vs tumor tissue in mouse intestinal swiss rolls

adiezsanchez/workshop-spatial-NBISweden

adiezsanchez/YAP_nuclear_3D_orgs

Checking nuclear translocation of proteins using Voronoi-Otsu labeling and label erosion from pyclesperanto. Maybe Cellpose cyto (WIP)