adigenova/wengan

Issues

• Final assembly too small

  #80 opened a year ago by NickJeff13
  6

• make: *** [m013330.mk:4: m013330.abyss2-contigs.fa] Error 2

  #78 opened a year ago by Soleilcode
  2

• Unable to install DiscovarDenovo

  #79 opened a year ago by soniabalyan
  0

• Error 136

  #77 opened a year ago by 22paulae
  0

• Wengan error 1

  #76 opened 2 years ago by lesimonson
  2

• longreads error

  #56 opened 3 years ago by josieparis
  8

• Error 132 - linger

  #75 opened 2 years ago by Hufflepuff1012
  0

• Leveraging ONT raw and PacBio raw

  #74 opened 2 years ago by 000generic
  1

• issues with non IUPAC bases

  #70 opened 2 years ago by gargkritika
  1

• unrecognized command 'iupac2bases'. Abort!

  #71 opened 2 years ago by mergi-2674
  1

• Installatation

  #72 opened 2 years ago by bioramg
  1

• SPolished.asm.wengan.fasta] Error 136

  #73 opened 2 years ago by josemolina6
  3

• Recommendation for Illumina + PacBio HiFi + ultralong ONT?

  #40 opened 4 years ago by dhoconno
  3

• Problem running Wengan with singularity

  #32 opened 4 years ago by brookshenry3
  3

• Error 137

  #67 opened 2 years ago by shadowind
  4

• Using error corrected long reads

  #66 opened 2 years ago by rjg2186
  2

• Unhandled kmer size

  #69 opened 2 years ago by ebarta
  1

• Is adapter filtering needed?

  #68 opened 3 years ago by andreaswallberg
  1

• asm1.minia.41.contigs.fa] Error 127

  #64 opened 3 years ago by bio-informatician
  3

• "--clib" flag error in intervalmiss

  #65 opened 3 years ago by tim-oconnor
  2

• error2

  #63 opened 3 years ago by botellaflotante
  3

• Parameter recommendation for low coverage Nanopore read ( 5X; N50 ~ 5kb)

  #38 opened 4 years ago by hxg2760
  5

• Setting new tmp directory for intermediate files

  #62 opened 3 years ago by jblandis
  1

• Error 139

  #61 opened 3 years ago by JIBINJOHNV
  4

• HiFi/short-read hybrid assembly

  #60 opened 3 years ago by bishopia
  1

• Incredibly small assembly

  #54 opened 3 years ago by wbrewer5
  8

• WENGAN performance!!

  #55 opened 3 years ago by Hai1983
  2

• short read assembly commands

  #57 opened 3 years ago by JacobSnelling
  4

• No rule to make target 'asm.MBC1.msplit.cov.txt', needed by 'asm1.fa'.

  #53 opened 3 years ago by sigau
  5

• Assembly methods

  #58 opened 3 years ago by OZTaekOppa
  1

• No rule to make target 'asm.MBC1.msplit.cov.txt', needed by 'asm1.fa'.

  #59 opened 3 years ago by sigau
  1

• liger maxpos Assertion error

  #49 opened 3 years ago by alexweisberg
  2

• Need help for assemblying a high heterozygous genome with platanus2

  #50 opened 3 years ago by bioinformaticspcj
  3

• core dump when using docker

  #51 opened 3 years ago by yipukangda
  4

• make: *** [asm1.SPolished.asm.wengan.fasta] Error 134

  #47 opened 4 years ago by mictadlo
  6

• Not in gzip format

  #52 opened 3 years ago by shaobinzhong
  2

• short read assembly only

  #48 opened 4 years ago by carollia
  2

• Need help for assemblying a high heterozygous genome!

  #46 opened 4 years ago by bioinformaticspcj
  3

• A liger error was reproted, need help!

  #45 opened 4 years ago by bioinformaticspcj
  2

• Why the assembly size is smaller than expected?

  #44 opened 4 years ago by bioinformaticspcj
  3

• ERROR: read file XYZ.fastq.gz don't exist or have 0 size.

  #43 opened 4 years ago by jirivorel
  1

• Could you give some advice for assembly a 2G sized genome with 60X Pacbio and 60 X illumina data?

  #35 opened 4 years ago by bioinformaticspcj
  2

• Possibility of integrating Megahit as a new member for SR assembly?

  #42 opened 4 years ago by hxg2760
  4

• Does it run on computer cluster and how to continue running unfinished tasks?

  #39 opened 4 years ago by Hans-zhao831
  5

• How to combine mate-pair reads?

  #41 opened 4 years ago by minky
  1

• core dumped at liger step

  #37 opened 4 years ago by minky
  3

• How to set up -g parameter ?

  #36 opened 4 years ago by ShaolinXU
  3

• make: *** [myse.SPolished.asm.wengan.fasta] Error 134

  #33 opened 4 years ago by desmodus1984
  2

• ERROR: read file don't exist or have 0 size

  #34 opened 4 years ago by brookshenry3
  2

• Congratulations

  #31 opened 4 years ago by flystar233
  1