alexbowe
PhD in Bioinformatics. Creator of Cosmo succinct de Bruijn graph DNA assembler. Early engineer @cruise-automation. Occasional Blogger.
@smoothbrain-ai, @cosmo-team, @cruise-automationSan Francisco
Pinned Repositories
cardgen
Python script to generate flash cards in LaTeX
debby
A demo implementation of Succinct de Bruijn Graphs.
keyphrase
Key phrase extraction using Hadoop + Dumbo + NLTK
leetcode-anki-with-grind75
Anki cards generator for Leetcode
phd-thesis
PhD Thesis: Succinct de Bruijn Graphs
wavelet-paper
Paper based on my thesis on multiary wavelet trees.
cosmo
Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
smoothbrain-anki
SmoothBrain is an Anki plugin that fetches Readwise highlights and makes flashcards using OpenAI GPT.
alexbowe's Repositories
alexbowe/nanotime_wrapper
C/C++ wrapper for nanosecond resolution timing functions on Windows, Linux, Solaris, and Mac OS X (WARNING: granularity and internal behavior may vary)
alexbowe/generators
Python generator framework and some generators... Mainly used for random selection of a line from several files.