alexbowe
PhD in Bioinformatics. Creator of Cosmo succinct de Bruijn graph DNA assembler. Early engineer @cruise-automation. Occasional Blogger.
@smoothbrain-ai, @cosmo-team, @cruise-automationSan Francisco
alexbowe's Stars
mindsdb/mindsdb
The platform for building AI from enterprise data
janhq/jan
Jan is an open source alternative to ChatGPT that runs 100% offline on your computer. Multiple engine support (llama.cpp, TensorRT-LLM)
sloria/TextBlob
Simple, Pythonic, text processing--Sentiment analysis, part-of-speech tagging, noun phrase extraction, translation, and more.
HypothesisWorks/hypothesis
Hypothesis is a powerful, flexible, and easy to use library for property-based testing.
NVIDIA/thrust
[ARCHIVED] The C++ parallel algorithms library. See https://github.com/NVIDIA/cccl
grantjenks/python-sortedcontainers
Python Sorted Container Types: Sorted List, Sorted Dict, and Sorted Set
simongog/sdsl-lite
Succinct Data Structure Library 2.0
ashvardanian/StringZilla
Up to 10x faster strings for C, C++, Python, Rust, and Swift, leveraging SWAR and SIMD on Arm Neon and x86 AVX2 & AVX-512-capable chips to accelerate search, sort, edit distances, alignment scores, etc 🦖
emil-e/rapidcheck
QuickCheck clone for C++ with the goal of being simple to use with as little boilerplate as possible.
AccelerateHS/accelerate
Embedded language for high-performance array computations
jgarzik/pyminer
Python miner for bitcoin
voutcn/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
apirrone/Memento
Memento is a Python app that records everything you do on your computer and lets you go back in time, search, and chat with a LLM (Large Language Model) to find back information about what you did.
stxxl/stxxl
STXXL: Standard Template Library for Extra Large Data Sets
takemaru/graphillion
Fast, lightweight graphset operation library
arunbhardwaj/LeetHub-2.0
Automatically sync your leetcode solutions to your github account - with some updates to keep it working
wesm/vbench
vbench: A tool for benchmarking your code through time, for showing performance improvement or regressions
ot/succinct
A collection of succinct data structures
fclaude/libcds
Compact Data Structures Library
mcveanlab/mccortex
De novo genome assembly and multisample variant calling
ngs-docs/ngs-notebooks
bramcohen/benchmark_spaces
Benchmarks of how well different two dimensional spaces work for clustering algorithms
gabraham/FMPR
Fused Penalized Multi-task Regression
alexbowe/phd-thesis
PhD Thesis: Succinct de Bruijn Graphs
alexbowe/nanotime_wrapper
C/C++ wrapper for nanosecond resolution timing functions on Windows, Linux, Solaris, and Mac OS X (WARNING: granularity and internal behavior may vary)
alexbowe/simplex
Pascal's Simplex generator
ndimiduk/contrail-bio
Mirror of: A Hadoop based genome assembler for assembling large genomes in the clouds
alexbowe/Euler
My Project Euler solutions. Pretty much all in Python, though might have some Haskell or Ruby or Mathematica. For some extremely easy questions I won't have saved my solution.
alexbowe/template_fill
a script to put in your path that fills templates from python and yaml definitions
alexbowe/tree-functions