alexvpickering

alexvpickering's Stars

• nanxstats/awesome-shiny-extensions

  🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny

  1.5k7016182

• thethoughtemporium/Whose-gene-is-it-anyway

  Language:JavaScript772941882

• react-R/reactR

  React for R

  Language:JavaScript415113234

• jrowen/rhandsontable

  A htmlwidgets implementation of Handsontable.js

  Language:HTML38834388150

• dmcable/spacexr

  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

  Language:HTML3291020575

• BetaHuhn/repo-file-sync-action

  🔄 GitHub Action to keep files like Action workflows or entire directories in sync between multiple repositories.

  Language:JavaScript29893984

• saezlab/decoupleR

  R package to infer biological activities from omics data using a collection of methods.

  Language:R218610124

• crazyhottommy/TCR-BCR-seq-analysis

  T/B cell receptor sequencing analysis notes

  21610032

• juba/scatterD3

  R scatter plot htmlwidget based on D3.js

  Language:JavaScript160118722

• mmcdermott/EventStreamGPT

  Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex internal dependencies.

  Language:Jupyter Notebook10845317

• immunogenomics/symphony

  Efficient and precise single-cell reference atlas mapping with Symphony

  Language:Jupyter Notebook100154923

• msesia/deepknockoffs

  Approximate knockoffs and model-free variable selection.

  Language:Python523413

• SwiCago/HarviaWiFi

  Wifi Control of Harvia KIP Sauna Heater

  Language:C++42101510

• vitessce/vitessceR

  R API and htmlwidget for Vitessce

  Language:R394439

• hms-dbmi-cellenics/ui

  Front-end for Cellenics

  Language:JavaScript292021

• hms-dbmi-cellenics/api

  The API for Cellenics, staying in between the UI and the backends (worker, pipeline)

  Language:JavaScript241021

• hms-dbmi-cellenics/iac

  Cellenics Infrastructure as Code and GitOps repository.

  Language:JavaScript243022

• hms-dbmi/dseqr

  single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

  Language:R2081674

• satijalab/azimuth-references

  Language:R2041410

• mckellardw/scMuscle

  The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

  Language:HTML191114

• hms-dbmi-cellenics/pipeline

  The Cellenics pipeline project for dependency-managed work processing.

  Language:R13103

• hms-dbmi-cellenics/developer-docs

  All development docs are kept in here.

  Language:Shell12400

• hms-dbmi-cellenics/worker

  k8s worker that executes R code for experiments.

  Language:R12102

• hms-dbmi-cellenics/cellenics-utils

  A CLI package for managing Cellenics infrastructure and codebase.

  Language:Python10206

• LTLA/MoeDCPLogo

  Making the DCP logo moe-r.

  8400

• hms-dbmi-cellenics/testing

  Language:JavaScript7103

• girke-lab/signatureSearchData

  Reference datasets used by the associated signatureSearch software package

  Language:R5412

• hms-dbmi-cellenics/vitessce

  Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

  Language:JavaScript5003

• PRIDE-reanalysis/DIA-reanalysis

  Reanalysis pipeline code and results

  Language:R2301

• hms-dbmi-cellenics/issues

  This repository is used to report and track issues

  111090