immunogenomics/symphony
Efficient and precise single-cell reference atlas mapping with Symphony
Jupyter NotebookGPL-3.0
Issues
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- 6
prediction score
#4 opened by padza21 - 0
Error: Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD
#49 opened by vivekruhela - 1
- 8
Seurat object as reference
#17 opened by NK-HD - 1
Query no longer projecting onto reference?
#47 opened by cedmo001 - 2
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- 1
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Error message:"In split.default(seq_len(N), groups) : data length is not a multiple of split variable"
#26 opened by qicheng-ma - 0
- 2
Create reference using harmonypy results
#32 opened by yyoshiaki - 1
is there a version for python?
#36 opened by wubaosheng - 0
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Symphony update for R version 4.2.1
#37 opened by mghanizada - 1
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Reproducing a UMAP embedding with Symphony
#31 opened by yannk-lm - 2
- 2
One cluster in reference is completely missing in query predicted clusters - even when using a sample that was used for reference building
#16 opened by florian0512 - 0
- 1
Error in irlba(ref_exp_scaled, nv = 20)
#38 opened by Lila3141 - 0
- 1
No plotBasic() defined in utils.R
#28 opened by qicheng-ma - 3
Error when using Fibroblast atlas
#23 opened by jk86754 - 2
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Error message: in vargenes_vst
#29 opened by qicheng-ma - 3
I can not find "exprs_norm_all.rds" and "meta_data_subtypes.csv" from data folder?
#21 opened by holiday01 - 8
Labels in Memory T Cell Atlas missing
#14 opened by mihem - 0
How can I use your pipeline to annotate the in-house CITE-Seq query dataset with both scRNA-seq count matrix and ADT count matrix ?
#24 opened by qicheng-ma - 3
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Symphony installation question
#6 opened by rach88 - 2
argument confidence in knnPredict.Seurat
#19 opened by klaramagdalena - 5
Symphony labels when query is a negative control
#20 opened by hbandukw - 1
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- 1
Documentation typo
#13 opened by GWW - 2
- 7
Suggestion to update the new source code
#8 opened by Yale73 - 4
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could not find function "vargenes_vst"
#5 opened by guanlinW - 2
- 3
Error installing
#2 opened by alitinet - 10
Fail to install on both R 3.6 and R 4.0
#1 opened by cnk113