algbio/themisto

Issues

• Store input names in the index

  #44 opened 3 months ago by tmaklin
  2

• [Feature Request] Bioconda installation

  #42 opened 3 months ago by jolespin
  2

• Recommended usage for metatranscriptomics

  #41 opened 3 months ago by jolespin
  2

• stochastic bug causes themisto build to hang indefinitely (themisto_linux-v3.2.1)

  #40 opened 5 months ago by rohanmaddamsetti
  3

• installation error with rust on macOS

  #35 opened 5 months ago by rohanmaddamsetti
  12

• Incorrect number of read alignments returned

  #36 opened 6 months ago by harry-thorpe
  12

• Throw error if manual color ids are not integers

  #37 opened 5 months ago by jnalanko
  0

• Wrong version number printed

  #32 opened 6 months ago by jnalanko
  1

• minor documentation issue: need to "git clone" for themisto installation instructions to work

  #34 opened 7 months ago by rohanmaddamsetti
  0

• option to print genome labels from index?

  #33 opened a year ago by clb21565
  5

• terminate called after throwing an instance of 'std::runtime_error' what(): BUG: dead end in get_color_set_id

  #31 opened a year ago by dbu008
  13

• Output is not sorted with --sort-output

  #28 opened a year ago by AntonBogun
  2

• Odd behavior if input multifasta to `build` contains empty sequences

  #12 opened a year ago by tmaklin
  1

• Themisto hangs with invalid input format

  #29 opened a year ago by AntonBogun
  2

• core dumped during sorting KMC database

  #25 opened 2 years ago by shenwei356
  4

• Compilation issue

  #24 opened 2 years ago by jermp
  9

• themisto build dies when multithreading

  #20 opened 2 years ago by clb21565
  9

• segmentation fault when trying to build without using the -c argument

  #17 opened 2 years ago by PandorasRed
  11

• BOSS_TEST.construction hangs sometimes

  #19 opened 2 years ago by jnalanko
  0

• Randomize non-ACGT and then build colors by --load-dbg may fail?

  #18 opened 2 years ago by jnalanko
  0

• Loading a precomputed de Bruijn graph requires `--node-length` parameter despite contrary info in the documentation

  #13 opened 3 years ago by tmaklin
  1

• Themisto executable or conda version?

  #11 opened 3 years ago by Jgruetzke
  1

• Sequence and reverse complement generating different unitigs

  #10 opened 3 years ago by krobison13
  1

• Indexes for the same de Bruijn graph built from a different number of copies of the same FASTA file have different sizes

  #6 opened 3 years ago by karel-brinda
  5

• `terminate called after throwing an instance of 'std::bad_alloc'` when asking for more memory than is available

  #9 opened 3 years ago by tmaklin
  0

• 27092 Killed: 9

  #5 opened 4 years ago by karel-brinda
  4

• *.fa suffix is not supported

  #2 opened 4 years ago by karel-brinda
  1

• Themisto doesn't work with any input data (Error: Cannot open temporary file tmp/kmc_00250.bin)

  #3 opened 4 years ago by karel-brinda
  2