alxndrdiaz

alxndrdiaz's Stars

• ByteByteGoHq/system-design-101

  Explain complex systems using visuals and simple terms. Help you prepare for system design interviews.

  67.5k852507.1k

• aria2/aria2

  aria2 is a lightweight multi-protocol & multi-source, cross platform download utility operated in command-line. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink.

  Language:C++36.4k7431.9k3.6k

• jqlang/jq

  Command-line JSON processor

  Language:C30.9k3252.2k1.6k

• Kanaries/pygwalker

  PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

  Language:Python13.7k82223718

• wireservice/csvkit

  A suite of utilities for converting to and working with CSV, the king of tabular file formats.

  Language:Python6.1k130925606

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.9k861.1k424

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python961107175

• pola-rs/r-polars

  Polars R binding

  Language:R4871235436

• hodcroftlab/covariants

  Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

  Language:Python31821172112

• nf-core/mag

  Assembly and binning of metagenomes

  Language:Nextflow224161307114

• apcamargo/genomad

  geNomad: Identification of mobile genetic elements

  Language:Python205513519

• pangenome/odgi

  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

  Language:C++1981314941

• ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit

  Language:Python1741323948

• nf-core/fetchngs

  Pipeline to fetch metadata and raw FastQ files from public databases

  Language:Nextflow1551008575

• askimed/nf-test

  Simple test framework for Nextflow pipelines

  Language:Java147718326

• thegenemyers/FASTGA

  Pairwise whole genome aligner

  Language:C1431036

• humancomputerintegration/ecoEDA

  Language:Python126824

• steineggerlab/Metabuli

  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

  Language:C++12563710

• asl/BandageNG

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++117129710

• IndexThePlanet/Logan

  Logan Unitigs and Contigs

  1118133

• pirovc/ganon

  ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

  Language:Python9447113

• DyogenIBENS/Agora

  Algorithm For Gene Order Reconstruction in Ancestors

  Language:Python7184115

• CDCgov/phoenix

  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

  Language:Python6185819

• sanger-tol/genomenote

  Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.

  Language:Python248736

• JRowleyLab/HiCrayon

  Web-Application for the cross-visualization of HiC and ChIP-seq data.

  Language:R15100

• Eco-Flow/synteny

  A Nextflow pipeline for running synteny analysis.

  Language:Perl130643

• sanger-tol/blobtoolkit

  Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.

  Language:Nextflow117494

• nf-core/createtaxdb

  Parallelised and automated construction of metagenomic classifier databases of different tools

  Language:Nextflow7165326

• thebgacademy/T2T_with_verko

  TheBGAcademy 2024: Learn how to run verkko assembler as well as going over the different outputs and common things to check an assembly for first.

  6201

• sanger-tol/longreadmag

  Language:Nextflow150