Pinned Repositories
covid19-event-risk-planner
COVID19 risk planner R-Shiny application
URDO-SMOREd
Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.
AlignGraph
Algorithm for secondary de novo genome assembly guided by closely related references
AmnesiaTheDarkDescent
GADGET_compute
Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/
GADGET_explore
Source code for the GADGET explore module: https://gadget.biosci.gatech.edu/explore/
stringMLST
Fast k-mer based tool for multi locus sequence typing (MLST)
ar0ch's Repositories
ar0ch/AmnesiaTheDarkDescent
ar0ch/aroonchan.de
https://aroonchan.de
ar0ch/bioconda-recipes
Conda recipes for the bioconda channel.
ar0ch/cookiecutter-flask-restful
Flask cookiecutter template for builing APIs with flask-restful, including JWT auth, cli, tests, swagger, docker and more
ar0ch/covid-19-event-risk-planner
Charts that estimate collective risk that large events will have one (or more) COVID-19 positive individuals.
ar0ch/covid19-event-risk-planner
COVID19 risk planner R-Shiny application
ar0ch/cv
Latex markup for my CV: https://aroonchande.com/cv
ar0ch/docker-ubuntu-vnc-desktop
Docker image to provide HTML5 VNC interface to access Ubuntu LXDE and LXQT desktop environment
ar0ch/dotfiles
kui's dotfiles and scripts
ar0ch/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
ar0ch/examples
Simple guided examples of how to use Caddy
ar0ch/gitignore
A collection of useful .gitignore templates
ar0ch/gwas-ui
ar0ch/html-to-svg
svg screenshot of web pages (saves the given URL to an SVG file)
ar0ch/kounta
🧮 🔢 Generate multi-sample k-mer count matrix from WGS
ar0ch/lyve-SET
LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations
ar0ch/mic_prediction
Code for doing MIC predictions on genomes
ar0ch/NASP
Northern Arizona SNP Pipeline
ar0ch/nord-putty
An arctic, north-bluish clean and elegant PuTTY color theme.
ar0ch/pip
The PyPA recommended tool for installing Python packages
ar0ch/proteinatlas_pathology_api
API for reannotated HPA data
ar0ch/proteinatlas_pathology_processor
Automated ingesting and reannotation and quantification of HPA pathology images
ar0ch/RampDB
ar0ch/repo-analytics.github.io
Thorough analytics for your GitHub repos
ar0ch/SCOP
ar0ch/sever
🔪Good-looking problems: customise your Shiny disconnected screen and error messages
ar0ch/shinypanels
Collapsible panels layout for r shiny apps
ar0ch/stringMLST
Fast k-mer based tool for multi locus sequence typing (MLST)
ar0ch/TreeToReads
Pipeline to generate NGS reads from a phylogeny
ar0ch/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities