Pinned Repositories
shallowHRD
This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).
TULIP
Classifying RNA-seq samples into different tumor types.
WisecondorX
WisecondorX — An evolved WISECONDOR
super-HTS
Train a DL algorithm to perform super high-throughput screening of enzyme mutants in under 1 millisecond per variant, enabling the screen of the entire search space if wanted
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
hic_breakfinder
jvarkit
Java utilities for Bioinformatics
Cancer-Prediction-Genomes-AzureML
Cancer-Prediction-Genomes-AzureML
STAR-Fusion
STAR-Fusion codebase
EagleC
A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
asaki1986's Repositories
asaki1986/shallowHRD
This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).