XiaoTaoWang/EagleC
A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
NOASSERTION
Issues
- 1
- 1
- 1
pretrained models with low resolution
#40 opened by asaki1986 - 1
Help Interpreting Results for Structural Variations
#39 opened by qolba - 1
- 0
Submitting jobs using bash array
#38 opened by re2srm - 0
- 0
On the problem of standard sets
#36 opened by TomWang666 - 5
Hi-C 3.0 with DdeI+DpnII
#34 opened by gibcus - 1
Failed to run "download-pretrained-models"
#33 opened by bismarck1008 - 7
No module named 'eaglec.scoreUtils'
#31 opened by jiadong324 - 2
"TypeError: sequence item 18: expected str instance, NoneType found", continue with merge-redundant-SVs?
#32 opened by tolender - 0
- 2
Inquiry for KeyError:'sweight'
#29 opened by Sanghyun-WaxingMoon - 0
- 1
Application to dm6
#27 opened by MarcoDiS - 1
Optimization loop failed
#26 opened by DittmanC - 9
error - eaglec.scoreUtils Not found
#19 opened by abhijitcbio - 1
specify gpu number to use
#25 opened by Xieeeee - 2
FileNotFoundError: [Errno 2] No such file or directory: 'Sample.CNN_SVs.10K.txt'
#24 opened by abhijitcbio - 4
Non human genomes
#23 opened by luciaalvarez95 - 3
Capture HiC data
#20 opened by yfarjoun - 2
EagleC detecting too few SVs
#22 opened by nyuhic - 4
EagleC HiChIP with Neoloopfinder
#21 opened by nyuhic - 2
How much resources are needed
#17 opened by nyuhic - 4
an error with 'weight'
#5 opened by distilledchild - 2
- 2
- 3
No module named 'eaglec.scoreUtils'
#9 opened by guandailu - 2
- 1
- 2
inquiries on output files
#13 opened by distilledchild - 7
Failed to download pre-trained models
#8 opened by shenlinyong - 2
OSError file signature not found
#12 opened by ValentinaBoP - 4
_expected.pkl is not found
#10 opened by Bo-UT - 2
predictSV have some error
#11 opened by yangfeizZZ - 2
output of EagleC as input of Neoloopfinder
#7 opened by Bo-UT - 2
Same results with ICE and CNV normalized data
#6 opened by Bo-UT - 1
Select SV type before running
#4 opened by baozg - 3
Key Error: 'sweight' in the predictSV
#3 opened by baozg - 4
Download manually for HPC
#2 opened by baozg - 13