aweimann/traitar

Issues

• traitar phenotype

  #71 opened a year ago by lanlan0210
  8

• Set numpy version in bioconda recipe

  #70 opened 2 years ago by liamfitzstevens
  1

• Doesnt work for me at the first step

  #53 opened 8 years ago by fauziharoon
  5

• Python 3.x

  #35 opened 9 years ago by aweimann
  4

• Update bioconda recipe to resolve: AttributeError: 'DataFrame' object has no attribute 'sort'

  #69 opened 4 years ago by Jtrachsel
  0

• Misalignment of Traitar heatmap

  #64 opened 7 years ago by haruosuz
  2

• Filename limit of 40 chars

  #68 opened 6 years ago by foobarx
  1

• AttributeError: 'DataFrame' object has no attribute 'sort_values'

  #65 opened 7 years ago by sminot
  12

• failed to reproduce the example result using the docker image

  #67 opened 6 years ago by housw
  2

• SyntaxError: Missing parentheses in call to 'print'.

  #66 opened 6 years ago by jahicks4
  3

• TypeError: expected string or buffer

  #63 opened 7 years ago by Katterinne
  3

• Update refs

  #57 opened 7 years ago by abremges
  2

• Problems with Pfam-A

  #61 opened 7 years ago by gerpinho
  3

• Traitar fails if all samples have the same categories

  #60 opened 7 years ago by aweimann
  0

• Duplicate sample names

  #59 opened 7 years ago by aweimann
  0

• -c leads to "Unknown option" message

  #51 opened 8 years ago by bachev
  1

• error while running traitar phenotype

  #58 opened 8 years ago by TonyaWard
  0

• Missing parentheses in call to 'print'

  #55 opened 8 years ago by swuyts
  4

• ERROR: reduce the number of sample categories to less than 15

  #56 opened 8 years ago by mattbawn
  1

• Heatmap generation fails

  #54 opened 8 years ago by mherold1
  2

• Error message

  #52 opened 8 years ago by suzumar
  4

• Auto-install python dependencies

  #21 opened 8 years ago by abremges
  3

• Alternative gene prediction software

  #29 opened 8 years ago by aweimann
  1

• Optionally disable genome and/or phenotype clustering

  #47 opened 8 years ago by abremges
  5

• no prodigal required if from_genes

  #45 opened 8 years ago by aweimann
  0

• requirements

  #36 opened 8 years ago by aweimann
  3

• Packaging of config file

  #49 opened 8 years ago by abremges
  1

• Error during execution

  #48 opened 8 years ago by microbiaki
  3

• Get rid of future warnings

  #32 opened 9 years ago by aweimann
  0

• More verbose recompute messages

  #38 opened 9 years ago by aweimann
  0

• Print version

  #20 opened 9 years ago by abremges
  2

• Showcase example output

  #42 opened 9 years ago by abremges
  2

• only one sample supplied

  #39 opened 9 years ago by aweimann
  0

• 67 Traits?

  #22 opened 9 years ago by abremges
  1

• feature track generation

  #27 opened 9 years ago by aweimann
  0

• GNU parallel --will-cite

  #28 opened 9 years ago by aweimann
  2

• config problem

  #30 opened 9 years ago by aweimann
  0

• legend placement

  #33 opened 9 years ago by aweimann
  0

• feature track generation

  #37 opened 9 years ago by aweimann
  0

• traitar pfam /tmp/traitar-pfam uses too much RAM

  #31 opened 9 years ago by fungs
  2

• Undocumented sample file

  #18 opened 9 years ago by abremges
  0

• sample_data

  #26 opened 9 years ago by abremges
  0

• Print help if (sub)program is called w/o args

  #19 opened 9 years ago by abremges
  1

• Download fails if folder doesn't exist

  #17 opened 9 years ago by abremges
  1

• Print smth. before the hmmsearch step

  #25 opened 9 years ago by abremges
  1

• traitAR name

  #23 opened 9 years ago by abremges
  1

• traitAR stdout

  #13 opened 9 years ago by aweimann
  0

• example data

  #15 opened 9 years ago by aweimann
  0

• urllib2 stream bug

  #14 opened 9 years ago by aweimann
  0

• check if config and pfam hmm path are available

  #16 opened 9 years ago by aweimann
  0