ay-amityadav

ay-amityadav's Stars

• penrose/penrose

  Create beautiful diagrams just by typing notation in plain text.

  Language:TypeScript7.6k119757349

• Fechin/reference

  ⭕ Share quick reference cheat sheet for developers.

  Language:EJS6.8k70401911

• fbdesignpro/sweetviz

  Visualize and compare datasets, target values and associations, with one line of code.

  Language:Python3k54138276

• argenos/zotero-mdnotes

  A Zotero plugin to export item metadata and notes as markdown files

  Language:JavaScript1.4k1814282

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k351.2k228

• ncbi/sra-tools

  SRA Tools

  Language:C1.2k57867251

• lmfit/uncertainties

  Transparent calculations with uncertainties on the quantities involved (aka "error propagation"); calculation of derivatives.

  Language:Python5951316177

• rrwick/Unicycler

  hybrid assembly pipeline for bacterial genomes

  Language:C++57630330136

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python550159371

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow4251452873

• marbl/Mash

  Fast genome and metagenome distance estimation using MinHash

  Language:C++3963316790

• mmatschiner/tutorials

  Tutorials on phylogenetic and phylogenomic inference

  Language:HTML3671718171

• pmelsted/bifrost

  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

  Language:C++208127225

• cmdcolin/oddgenes

  A small database of weird gene annotations

  Language:Raku20012111

• MGXlab/CAT_pack

  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

  Language:Python199910731

• PacificBiosciences/pb-metagenomics-tools

  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

  Language:HTML181136735

• bionitio-team/bionitio

  Demonstrating best practices for bioinformatics command line tools

  Language:Shell11675126

• donovan-h-parks/CompareM

  A toolbox for comparative genomics.

  Language:Python9873519

• oschwengers/referenceseeker

  Rapid determination of appropriate reference genomes.

  Language:Python906265

• gem-pasteur/PanACoTA

  PANgenome with Annotations, COre identification, Tree and corresponding Alignments

  Language:Python726388

• donovan-h-parks/RefineM

  A toolbox for improving metagenome-assembled genomes.

  Language:Python635529

• biocore/empress

  A fast and scalable phylogenetic tree viewer for microbiome data analysis

  Language:JavaScript491533631

• biocore/redbiom

  Sample search by metadata and features

  Language:Python4587920

• sschmeier/genomics

  Sphinx documentation source for a computational genomics tutorial.

  Language:HTML334219

• MariaNattestad/dot

  Dot: An interactive dot plot viewer for comparative genomics

  Language:JavaScript32179

• VisDunneRight/sequence_braiding

  Language:JavaScript154302

• donovan-h-parks/biolib

  Python package for common tasks in bioinformatic.

  Language:Python13237

• Rothamsted/knetmaps.js

  KnetMaps: a BioJS component to visualize biological knowledge networks

  Language:JavaScript106226

• INCATools/biosample-analysis

  analysis of biosamples in INSDC

  Language:Jupyter Notebook37551

• cmdcolin/genomesignals

  A collection of types of genomic signals different people plot

  2