Pinned Repositories
altamisa
AltamISA: a Python API for ISA-Tab files
bih-cluster
BIH Cluster Wiki
digestiflow-server
:cocktail: Web-based database system for flow cell management (incl. REST API)
hlama
Simple matching of HTS samples based on HLA typing
NeatMS
NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
scelvis
:sparkler: SCelVis - web-based visualization of single-cell data. :arrow_right: :arrow_right: Demo :arrow_right::arrow_right:
sodar-core
SODAR Core: A Django-based framework for building scientific data management web apps
sodar-core-legacy
LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.
sodar-server
SODAR: System for Omics Data Access and Retrieval
vcfpy
Python 3 library with good support for both reading and writing VCF
Berlin Institute of Health's Repositories
bihealth/hlama
Simple matching of HTS samples based on HLA typing
bihealth/summarize-cohort-vcf
Compute summaries for cohort VCF files
bihealth/cbioportal_users
A quick hack for user management in cBioPortal developed by CUBI/BIH.
bihealth/cubit_docker
Build cubit inside Docker (useful for testing)
bihealth/cufflinks-mirror
Cufflinks mirror for versioning
bihealth/django-prbac
bihealth/easybuild-easyblocks
Collection of easyblocks that implement support for building and installing software with EasyBuild.
bihealth/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
bihealth/heroku-buildpack-python-ldap
Python buildpack
bihealth/kraken
Kraken taxonomic sequence classification system
bihealth/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
bihealth/OptiType-mirror
OptiType mirror that has our pip-installable fork and release.
bihealth/pelican-clean-blog
Theme based in Clean Blog layout to pelican blogs
bihealth/PyVCF
A Variant Call Format reader for Python.
bihealth/skewer-mirror
Skewer mirror for versioning
bihealth/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
bihealth/vcflib-mirror
vcflib mirror for versioning