bio-visualisation

bio-visualisation's Stars

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k351.1k230

• hms-dbmi/UpSetR

  An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

  Language:R75838233154

• rstudio/hex-stickers

  RStudio hex stickers

  Language:R4688624128

• zhanghao-njmu/SCP

  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

  Language:R385812783

• BioinformaticsFMRP/TCGAbiolinks

  TCGAbiolinks

  Language:R29525613112

• rvalieris/parallel-fastq-dump

  parallel fastq-dump wrapper

  Language:Python28385434

• grst/rstudio-server-conda

  Run Rstudio Server in a conda environment

  Language:Shell23162748

• saezlab/decoupleR

  R package to infer biological activities from omics data using a collection of methods.

  Language:R19369424

• aertslab/SCENICprotocol

  A scalable SCENIC workflow for single-cell gene regulatory network analysis

  Language:Python141126262

• hbc/knowledgebase

  recipes that save time

  Language:TeX121184432

• mcanouil/quarto-iconify

  Use Iconify icons in HTML-based Quarto documents (over 200,000 open source vector icons)

  Language:Lua1101130

• jokergoo/simplifyEnrichment

  Simplify functional enrichment results

  Language:R109410816

• AndreaCirilloAC/paletter

  build your palette from a picture √

  Language:R995512

• BlishLab/scriabin

  Analysis of cell-cell communication at single-cell resolution

  Language:R9662413

• vertesy/Seurat.utils

  Various utility functions for Seurat single-cell analysis

  Language:HTML344766

• raynamharris/Shell_Intro_for_Bioinformatics_STG

  Intro to Shell for Bioinformatics - with STG examples

  285011

• PawseySC/singularity-containers

  Webinars&Tutorial on Containers on HPC and Cloud with Singularity

  Language:Python261216

• mbassalbioinformatics/CnRAP

  Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.

  Language:Python187

• parveendabas/GBMatlas

  Language:R17119

• OscarGVelasco/ClusterFoldSimilarity

  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.

  Language:R16132

• p4rkerw/Wilson_Muto_NComm_2022

  Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

  Language:R13102

• bioinfo-biols/Code_for_circSC

  Analysis pipeline for our circSC manuscript

  Language:Python12104

• liliw-w/rstudio-server-conda_share

  rstudio on RCC

  Language:Shell6100

• crazyhottommy/MAESTRO

  Single-cell Transcriptome and Regulome Analysis Pipeline

  Language:C5201

• YiZhang-lab/iSpatial

  infer whole genome spatial transcriptome by integrating single cell RNAseq and spatial transcriptome

  Language:R51

• daisybio/circRNA-sponging

  Language:R43100

• mcw-rcc/rstudio-server

  Singularity container for RStudio-Server.

  Language:Shell2302

• YannVRB/Visium-SOR-mouse

  Language:R2

• ethanbahl/chatterjee2021_nr4a

  Language:R10

• YannVRB/Sleep-deprivation-and-protein-translation-TRAP-seq

  Code for upper quartile normalization and quadrant figures from the paper.

  Language:R11