jokergoo/simplifyEnrichment

Issues

• Customize simplifyGOFromMultipleLists plot

  #100 opened 9 months ago by kotliary
  0

• Problem with clustering

  #99 opened 9 months ago by GuiSeSanz
  0

• Error: 'keyword enrichment from GO' is not an exported object from 'namespace:simplifyEnrichment'

  #98 opened 9 months ago by Jzwing
  2

• Parallelize keyword enrichment

  #97 opened 10 months ago by j-andrews7
  0

• Error: rsession-arm64: UnableToOpenBlob

  #96 opened 10 months ago by sherryfan030
  0

• vignettes need to be updated

  #95 opened a year ago by jokergoo
  0

• increase size of word clouds with anno_word_cloud_from_GO

  #94 opened a year ago by ALbpASC
  0

• Cannot use TCSS with GO_similarity

  #93 opened a year ago by lillianhorin
  0

• Error simplifyGOFromMultipleLists() version 1.8

  #86 opened 2 years ago by IrSoler
  1

• Getting the data from compare_clustering_methods

  #92 opened a year ago by je71xusa
  0

• Add bar plot to simplifyGOFromMultipleLists

  #88 opened a year ago by jelman
  1

• Assign a representative GO term to each cluster

  #69 opened 2 years ago by eggrandio
  3

• Error in getFromNamespace

  #91 opened a year ago by sonoko97
  1

• Error in anno_word_cloud

  #90 opened a year ago by l-magnificence
  0

• Add annotation to the heatmap

  #89 opened a year ago by harimchun
  0

• Retain phrasing and keep "-" in word clouds

  #87 opened 2 years ago by yaaminiv
  0

• Error in simplifyGOFromMultipleLists

  #85 opened 2 years ago by merveyrc
  0

• exclude_words not working

  #84 opened 2 years ago by fedenichetti
  0

• Installation: Error in anno_zoom(...)

  #83 opened 2 years ago by Deepesh123gupta
  0

• how to know which GO annotation (after binary cut) corresponds to which cluster

  #82 opened 2 years ago by sadiexiaoyu
  0

• Singletons

  #81 opened 2 years ago by GreenGilad
  0

• Error message when running simplifyEnrichment function with clusterProfiler::GSEA() output

  #80 opened 2 years ago by ftencaten
  0

• Retrieve dendrogram created by binary cut

  #78 opened 2 years ago by GreenGilad
  1

• namespace error when calling simplifyGO

  #77 opened 2 years ago by russtafayyazi
  0

• Error in simplifyGOFromMultipleLists

  #74 opened 2 years ago by Knight1995
  2

• Ontology for simplifyGOFromMultipleLists

  #76 opened 2 years ago by brovolia
  1

• allow self-defined text in textbox annotations

  #75 opened 2 years ago by jokergoo
  0

• Allow additional Heatmaps to be passed to `export_to_shiny_app`.

  #62 opened 3 years ago by j-andrews7
  0

• Problem with using function simplifyGOFromMultipleLists

  #73 opened 2 years ago by BBJamge
  0

• to-do list (mainly for text analysis)

  #61 opened 3 years ago by jokergoo
  1

• cluster heatmap looks weird

  #72 opened 2 years ago by xcliu-oc
  1

• Word clouds based on member (gene) descriptions

  #56 opened 2 years ago by krassowski
  4

• Word cloud: show most over-represented words, not the most frequent ones

  #58 opened 2 years ago by krassowski
  1

• not found simplifyGOFromMultipleLists function

  #70 opened 2 years ago by cao523
  1

• Usage of anno_word_cloud

  #66 opened 2 years ago by hsiaoyi0504
  1

• change cat to message

  #71 opened 2 years ago by jokergoo
  0

• simplifyGOFromMultipleLists not found

  #68 opened 2 years ago by neuralsm
  1

• bug in simplifyGOFromMultipleLists

  #67 opened 2 years ago by aa20g217
  0

• Retrieving the similarity values

  #65 opened 3 years ago by ttumkaya
  1

• infinite loop

  #64 opened 3 years ago by jokergoo
  0

• groups should be clustered by default

  #63 opened 3 years ago by jokergoo
  0

• simplifyGO() function doesn't work anymore

  #60 opened 3 years ago by JingLi98-666
  4

• Make the default colors colour-blind tolerable

  #54 opened 3 years ago by krassowski
  2

• Colour the same words with the same colour

  #55 opened 3 years ago by krassowski
  1

• Preserve letter case for selected words in anno_word_cloud

  #50 opened 3 years ago by krassowski
  0

• Review the stopwords exclusion

  #51 opened 3 years ago by krassowski
  0

• Preserve whitespace for selected phrases and/or allow to include n-grams

  #52 opened 3 years ago by krassowski
  0

• All two-letter gene/protein/metabolite names are disregarded

  #53 opened 3 years ago by krassowski
  1

• Generic simplifyGOFromMultipleLists for gene sets databases other than GO?

  #49 opened 3 years ago by krassowski
  2

• Error in running `GO_similarity`

  #59 opened 3 years ago by kanekalla
  2