bio2bel/go

A Bio2BEL package for converting the Gene Ontology (GO) to BEL

Bio2BEL GO

Converts the Gene Ontology (GO) to BEL

Installation

bio2bel_go can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_go

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/go.git@master

Setup

GO can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_go
>>> go_manager = bio2bel_go.Manager()
>>> go_manager.populate()

Command Line Utility

bio2bel_go populate

Citation

• Ashburner, M., et al. (2000). Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics, 25(1), 25–9.

Links

• http://geneontology.org/page/ontology-documentation