Pinned Repositories
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
cyvcf2
cython + htslib == fast VCF and BCF processing
echtvar
using all the bits for echt rapid variant annotation and filtering
goleft
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
hts-nim
nim wrapper for htslib for parsing genomics data files
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
slivar
genetic variant expressions, annotation, and filtering for great good.
smoove
structural variant calling and genotyping with existing tools, but, smoothly.
somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
vcfanno
annotate a VCF with other VCFs/BEDs/tabixed files
brentp's Repositories
brentp/primer
Primer is a Flash-like API built on top of Canvas using jQuery. (this fork aims to improve speed and make it easier to attach events to objects).