broadinstitute/genetic-prevalence-estimator

Issues

• Change "Global" to "Total" in genetic ancestry groups for carrier frequency and genetic prevalence estimates

  #297 opened 15 days ago by sambaxter
  0

• Annotations not loading

  #302 opened 16 days ago by sambaxter
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• Numeric columns sort lexicographically

  #300 opened 22 days ago by rileyhgrant
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• Allow filtering variant table on ID

  #294 opened a month ago by sambaxter
  1

• Docker not recognizing changes in `package.json`

  #299 opened a month ago by elissa-alarmani
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• Modify dashboard variant inclusion logic

  #293 opened a month ago by sambaxter
  1

• Standardize header justification

  #286 opened 3 months ago by rileyhgrant
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• Keep track of list of variants to not include in calculations

  #181 opened a month ago by rileyhgrant
  1

• Overlapping columns in custom list with no default transcript

  #295 opened a month ago by sambaxter
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• Allow grouping of variants into arbitrary categories

  #167 opened a year ago by sambaxter
  2

• Parallelize dashboard list pipeline

  #292 opened 2 months ago by rileyhgrant
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• Allow scrolling within variant list window

  #280 opened 2 months ago by rileyhgrant
  1

• Drop "Latino" from genetic ancestry group

  #285 opened 2 months ago by sambaxter
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• Add user summary in staff view

  #269 opened 4 months ago by rileyhgrant
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• Add error summary view

  #270 opened 4 months ago by rileyhgrant
  1

• deselect of all variants doesn't work - reverts to selecting all each time

  #268 opened 4 months ago by sambaxter
  2

• Gene link on genie list page going to v3 not v4

  #289 opened 2 months ago by sambaxter
  1

• Add batch variant id convert utility

  #287 opened 2 months ago by rileyhgrant
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• Consider re-structuring data model for variants

  #279 opened 4 months ago by rileyhgrant
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• Update Terraform to reflect current google cloud build/run

  #281 opened 3 months ago by rileyhgrant
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• SVs not exporting when "download variants" on GeniE

  #282 opened 3 months ago by sambaxter
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• Handle VSQR variants differently

  #284 opened 3 months ago by rileyhgrant
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• Create a "report a list" button

  #283 opened 3 months ago by sambaxter
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• Allow filtering variants per column

  #276 opened 4 months ago by rileyhgrant
  1

• ClinVar variant included in dashboard list despite failing gnomAD QC

  #271 opened 3 months ago by rileyhgrant
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• ClinVar "Risk factors" should be removed from being brought in

  #260 opened 3 months ago by sambaxter
  2

• Update criteria for recommended and dashboard list variant imports

  #272 opened 3 months ago by rileyhgrant
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• List of Autosomal Recessive Genes for Dashboard

  #198 opened 4 months ago by sambaxter
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• ClinVar variant included without any pathogenic/likely pathogenic in list of conflicts

  #228 opened 4 months ago by sambaxter
  3

• Feasibility of using custom allele frequency data

  #267 opened 5 months ago by aymanm
  1

• PR Release

  #232 opened 5 months ago by rileyhgrant
  3

• Remove HC LoF that have a likely benign or benign classification in ClinVar

  #173 opened 5 months ago by sambaxter
  1

• Make it more obvious the preliminary estimates are not manually reviewed

  #261 opened 5 months ago by sambaxter
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• Create a download file of dashboard data for all AR genes

  #212 opened 5 months ago by sambaxter
  1

• update wording of question on variant list creation page

  #183 opened 10 months ago by sambaxter
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• Dashboard flags

  #231 opened 6 months ago by sambaxter
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• Add generic text field to Variant Lists

  #233 opened 6 months ago by rileyhgrant
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• Add option for removing homozygotes from carrier freq and genetic prevalence estimates

  #213 opened 6 months ago by sambaxter
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• Add Owner name and email to public lists

  #214 opened 6 months ago by sambaxter
  1

• Update FAQ text

  #230 opened 5 months ago by sambaxter
  1

• Add new genetic prevalence model

  #172 opened 6 months ago by sambaxter
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• Add Dashboard to GeniE

  #196 opened 6 months ago by rileyhgrant
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• Bug in the allele frequency brought into GeniE

  #229 opened 6 months ago by sambaxter
  1

• Bug in prevalence/carrier charts when uncheck "include subcontinental populations"

  #225 opened 6 months ago by sambaxter
  1

• Check conditional re-rendering of BarGraph

  #227 opened 6 months ago by rileyhgrant
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• Add option to re-process list

  #190 opened 9 months ago by rileyhgrant
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• Remaining not populating on v4 lists

  #187 opened 10 months ago by sambaxter
  1

• Update text on FAQ page

  #179 opened 10 months ago by sambaxter
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• Error being returned in manual list with single variant.

  #177 opened a year ago by sambaxter
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• Integrate gnomAD v4 data

  #174 opened a year ago by rileyhgrant
  0