Empty rp2paths results
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Running the following RetroPath2.0 results,
rp_pathways_28.csv.zip
returns empty out_path.csv results. Ran using the following conditions:
Molecule Name: Hydrocodone
Molecule InChI: InChI=1S/C18H21NO3/c1-19-8-7-18-11-4-5-13(20)17(18)22-16-14(21-2)6-3-10(15(16)18)9-12(11)19/h3,6,11-12,17H,4-5,7-9H2,1-2H3/t11-,12+,17-,18-/m0/s1
GEM SBML: s_cerevisiae_iMM904.sbml
TopX: 1000
Max Steps: 14
Rule Diameters: 2,4,6,8,10,12,14,16
Thanks @Melclic. That is due to the default value of the --maxsteps
argument. Until now, the default was 10, which means that only pathway having between 1 and 10 steps are outputted, pathways having more steps were filtered. Starting from the now the default value will be 0 for 'unlimited' number of steps, meaning no pathway filtering based on this criteria anymore.