cakirb
bioinformatician at Wellcome Sanger Institute @cellgeni, PhD candidate at GTU
Wellcome Sanger InstituteCambridge, UK
cakirb's Stars
dylanaraps/pure-bash-bible
📖 A collection of pure bash alternatives to external processes.
TheLastBen/fast-stable-diffusion
fast-stable-diffusion + DreamBooth
daattali/beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
sergiokopplin/indigo
Minimalist Jekyll Template, dark and light themes
satijalab/seurat
R toolkit for single cell genomics
gokceneraslan/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
erikgahner/awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
duerrsimon/bioicons
A library of free open source icons for science illustrations in biology and chemistry
chanzuckerberg/cellxgene
An interactive explorer for single-cell transcriptomics data
cellgeni/sceasy
A package to help convert different single-cell data formats to each other
nextflow-io/patterns
A curated collection of Nextflow implementation patterns
cole-trapnell-lab/monocle3
statOmics/tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
obophenotype/cell-ontology
An ontology of cell types
interactivereport/cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
micans/mcl
MCL, the Markov Cluster algorithm, also known as Markov Clustering, is a method and program for clustering weighted or simple networks, a.k.a. graphs.
cellgeni/batchbench
chanzuckerberg/single-cell-curation
Code and documentation for the curation of cellxgene datasets
micans/apparix
Command line directory bookmarks with jumping to bookmarks, subdirectory tab completion, distant listing etc
Teichlab/sctk
micans/nextflow-idioms
Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
cellgeni/rnaseq
Fast RNAseq pipeline
cellgeni/nf-introduction
An introduction to Nextflow, focussed on files and channels