cchd0001

cchd0001's Stars

• LiLittleCat/awesome-free-chatgpt

  🆓免费的 ChatGPT 镜像网站列表，持续更新。List of free ChatGPT mirror sites, continuously updated.

  Language:Python19.3k1478291.3k

• exaloop/codon

  A high-performance, zero-overhead, extensible Python compiler using LLVM

  Language:C++15.3k137428525

• widgetti/ipyvolume

  3d plotting for Python in the Jupyter notebook based on IPython widgets using WebGL

  Language:TypeScript2k53319233

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.3k261.1k371

• mdozmorov/scRNA-seq_notes

  A list of scRNA-seq analysis tools

  Language:R659301151

• zqfang/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python59012209121

• saeyslab/nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  Language:R50714291120

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python485818850

• satijalab/seurat-wrappers

  Community-provided extensions to Seurat

  Language:R31911145131

• ohirose/bcpd

  Bayesian Coherent Point Drift (BCPD/BCPD++/GBCPD/GBCPD++)

  Language:C3039039

• rmhubley/RepeatMasker

  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

  Language:Perl226625049

• cheind/py-thin-plate-spline

  Code for computing interpolating / approximating thin plate splines.

  Language:Jupyter Notebook1917638

• zktuong/ktplots

  Some tools for plotting single-cell data

  Language:R16636333

• YosefLab/VISION

  Signature Analysis and Visualization for Single-Cell RNA-seq

  Language:R16369233

• navinlabcode/CellTrek

  Language:R11334520

• Teichlab/cellhint

  A tool for semi-automatic cell type harmonization and integration

  Language:Python1004911

• tractatus/wholebrain

  R package for segmentation, registration and generating web-based brain atlases from microscope images

  Language:C++8694942

• ranahanocka/ALIGNet

  code to train a neural network to align pairs of shapes without needing ground truth warps for supervision

  Language:Cuda623216

• daviddmc/SVoRT

  SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRI

  Language:Python39386

• SunXQlab/scMLnet

  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks

  Language:R26158

• bayesrx/SpaceX

  SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics

  Language:R17292

• WangPeng-Lab/scGCO

  Single-cell Graph Cuts Optimization

  Language:Jupyter Notebook15274

• BGI-Qingdao/VT3D

  VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas

  Language:JavaScript13300

• Moein-Karami/RandStrobes

  Language:HTML8131

• BGI-Qingdao/SpaGRN

  A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.

  Language:Python6102

• BGI-Qingdao/4D-BioReconX

  a bioinformatic framework for reconstructing 4D spatial transcriptomics atlas and spatiotemporal analyses+

  Language:Jupyter Notebook5200

• BGI-Qingdao/Lungfish_scRNA_data_analysis

  Analysis code for lungfish single cell RNA-seq data

  Language:R3001

• QYanwei/Cycads

  Language:Python3110

• emosca-cnr/Ulisse

  Analysis of molecular cross-talks

  Language:R1100

• zenglab-regeneration/DRIM

  Deconvolution followed by Region-growing,Interpolation and iterative-Mapping

  Language:Python1101