ceesu

ceesu's Stars

• TheLastGimbus/GooglePhotosTakeoutHelper

  Script that organizes the Google Takeout archive into one big chronological folder

  Language:Dart4k44206196

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k351.6k601

• snakemake-workflows/rna-seq-star-deseq2

  RNA-seq workflow using STAR and DESeq2

  Language:Python3271139203

• glmmTMB/glmmTMB

  glmmTMB

  Language:HTML2902166560

• RGLab/MAST

  Tools and methods for analysis of single cell assay data in R

  Language:R2261017957

• theislab/diffxpy

  Differential expression analysis for single-cell RNA-seq data.

  Language:Python192718823

• stephenslab/susieR

  R package for "sum of single effects" regression.

  Language:R1791320747

• aws/amazon-genomics-cli

  Language:Go1472620483

• faryabib/too-many-cells

  Cluster single cells and analyze cell clade relationships with colorful visualizations.

  Language:Haskell45303

• solevillar/scGeneFit-python

  Python code for genetic marker selection using linear programming

  Language:Python413213

• alex-trapp/scAge

  Profiling epigenetic age in single cells

  Language:Jupyter Notebook36407

• lcmmichielsen/scHPL

  Language:Jupyter Notebook34391

• kdkorthauer/scDD

  R package to identify genes with differential distributions in single-cell RNA-seq

  Language:R3251815

• lhe17/nebula

  Language:C++282476

• Winnie09/imputationBenchmark

  benchmark for single-cell RNA-seq imputation methods

  Language:Jupyter Notebook23755

• crazyhottommy/pyflow-RNAseq

  RNAseq pipeline based on snakemake

  Language:Python22407

• kdzimm/PseudoreplicationPaper

  Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication in Single-Cell" study

  Language:HTML19455

• AsaCooperStickland/Spike_And_Slab

  Implementation of Gibbs sampling for spike and slab priors

  Language:Python18214

• elolab/multisubjectDSanalysis

  Language:R14204

• Hzhang-ouce/ARTofR

  R package ARTofR

  Language:R14100

• ldv1/bbvi_spike_and_slab

  Black-box spike and slab variational inference, example with linear models

  Language:Python11201

• cbrueffer/snakemake-aws-parallelcluster-slurm

  Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler

  Language:Shell9408

• dvav/dgeclust

  Hierarchical Non-Parametric Bayesian Clustering of Digital Expression Data

  Language:Python9148

• kdzimm/hierarchicell

  An R package for simulating cell-type specific and hierarchical single-cell expression data

  Language:R9396

• dpmartin42/mleda

  R package for multilevel exploratory data analysis

  Language:R8212

• rinpharma/positconf-roundtables-2023

  R/Pharma round tables agenda

  6633

• euxhenh/multiset-multicover

  Multiset multicover using the extended greedy cover algorithm implemented in C++ and exposed to Python.

  Language:C++5100

• calacademy-research/BLATq

  blatq is a modified version of BLAT—The BLAST-Like Alignment Tool to allow direct use of fastq files

  Language:C4401

• NazifaMoumi/cell-differentiation-trees

  Language:C31

• YQHuFD/HCDC

  Hierarchical Clustering based on Different methods for calculating Correlation coefficients

  Language:R1