Pinned Repositories
legacy-validator
Validator for the Brain Imaging Data Structure
Adaptive-Thresholding
Combination of Gamma Gaussian Mixture model and topological FDR for thresholding fMRI statistical maps.
alleninf
Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.
nipype
Pipelines and interfaces for neuroimaging packages
pypls
Partial Least Squares with permutation and bootstrap tests in python
NeuroVault
Easy to use web database for statistical maps.
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
nipype
Workflows and interfaces for neuroimaging packages
openneuro
A free and open platform for analyzing and sharing neuroimaging data
chrisgorgo's Repositories
chrisgorgo/alleninf
Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.
chrisgorgo/nipype
Pipelines and interfaces for neuroimaging packages
chrisgorgo/BIDS-examples-1
A set of BIDS compatible datasets with empty nifti files that can be used for testing software.
chrisgorgo/experiments
Collections of notebooks with machine learning experiments
chrisgorgo/slice_leakage
Comparison of 1D GRAPPA, split-slice GRAPPA and three different calibration scans using MRIQC
chrisgorgo/bids-validator
chrisgorgo/bids2datapackage
Automatic creation of datapackage.json formatted according to https://frictionlessdata.io/specs/data-package/
chrisgorgo/bidscoin
Maps source-level neuroimaging data onto a BIDS data structure
chrisgorgo/brain-networks-course
Repo for Brain Networks course
chrisgorgo/dataportals.org
Open Data Portals and Sites around the world
chrisgorgo/DeepDeface
Python package for automatic removal of facial features via deep learning
chrisgorgo/docker-python
Kaggle Python docker image
chrisgorgo/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
chrisgorgo/heudiconv
little helper to ease DICOM conversion to ready-to-share folder with heuristics
chrisgorgo/hospital-chargemaster-analysis
example (fun!) analysis with hospital chargemaster data
chrisgorgo/jupyter-edu-book
Teaching and Learning with Jupyter
chrisgorgo/kaggle-api
Official Kaggle API
chrisgorgo/mriqcwebapi
chrisgorgo/multibandCFtests
chrisgorgo/nii_extension
nii jupyter extension using papaya viewer
chrisgorgo/NiMARE
Coordinate- and Image-based meta-analysis in Python
chrisgorgo/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
chrisgorgo/open-data-registry
A registry of publicly available datasets on AWS
chrisgorgo/pydeface
defacing utility for MRI images
chrisgorgo/python_testing_nhw17
chrisgorgo/remark-lint
Markdown code style linter
chrisgorgo/scikit-learn
scikit-learn: machine learning in Python
chrisgorgo/SomeGiraffeExample
A test project of a giraffe analysis project
chrisgorgo/tech-interview-handbook
💯 Algorithms study materials, behavioral content and tips for rocking your coding interview
chrisgorgo/test_porcupine