chrisquince/DESMAN

Issues

• bam-readcount step stuck

  #52 opened 2 years ago by StickHu
  2

• Regarding phasing variants

  #51 opened 2 years ago by mdrishti
  0

• EMPTY OUTPUT from running desman

  #44 opened 5 years ago by chiaramazzoni
  8

• Error in pileups_to_freq_table.py, pileup file NOT FOUND

  #43 opened 5 years ago by chiaramazzoni
  3

• Anvio variability profile to DESMAN

  #50 opened 4 years ago by malihaaziz
  0

• How can I obtain preidentified 982 SCSGs?

  #33 opened 6 years ago by kmin940
  3

• ERROR estimateStrainCountDesman (3) with desmanflow

  #30 opened 6 years ago by xvazquezc
  19

• Python2 vs python3

  #48 opened 4 years ago by tstraub89
  6

• cdd_to_cog.tsv

  #49 opened 4 years ago by marcomeola
  1

• Snakefile error

  #47 opened 4 years ago by tstraub89
  0

• Pandas error in Filter_Variant step while using Desman snakemake version

  #45 opened 5 years ago by osvatic
  12

• Questions about multiple steps on the pipeline

  #37 opened 6 years ago by ilevade
  2

• ERROR in GeneAssign.py in straintigs

  #42 opened 5 years ago by lauren-mak
  0

• Memory requirements, number of strains

  #41 opened 5 years ago by mherold1
  0

• Error in CalcGeneCov.py for genes with a single SNP

  #40 opened 5 years ago by deropi
  0

• ERROR in estimateStrainCountDesman

  #39 opened 5 years ago by osvatic
  6

• Error with concoct_refine

  #38 opened 6 years ago by K-A-Meyer
  0

• Issue with SelectContigsPos.pl and ExtractCountFrep.pl

  #16 opened 7 years ago by gaohanlisa
  2

• Identifying core COGs for other species

  #32 opened 6 years ago by ilevade
  0

• Two issue with obtaining strain bins

  #36 opened 6 years ago by xif033
  0

• Error running automated workflow on test data

  #28 opened 6 years ago by pug-ventures
  2

• Error executing process > 'estimateStrainCountDesman (19)'

  #35 opened 6 years ago by xif033
  2

• Questions regarding complex synthetic mock data.

  #31 opened 6 years ago by kmin940
  0

• Python type issue

  #29 opened 6 years ago by njdbickhart
  1

• Recursion Error when running desman

  #24 opened 7 years ago by vnsriniv
  3

• Error when running Desman test: "Infer strains with Desman"

  #25 opened 7 years ago by sacl07
  1

• conda install

  #22 opened 7 years ago by JChristopherEllis
  15

• Issue with GeneAssign.py/Eta_sampler.py - IndexError

  #19 opened 7 years ago by vaxherra
  1

• ConfPlot.R issue

  #21 opened 7 years ago by NielQC
  0

• KeyError: 13 when running DESMAN

  #20 opened 7 years ago by alexcritschristoph
  7

• Cutoff for SNV uncertainty

  #18 opened 7 years ago by liuxianghui
  2

• Variant_Filter.py error

  #17 opened 7 years ago by nicoTR
  33

• Issue Contig taxonomic assignment

  #15 opened 8 years ago by rprops
  3

• ExtractCountFreqP.pl broken?

  #6 opened 8 years ago by alneberg
  2

• error with desman

  #4 opened 8 years ago by fwhelan
  11

• bam-readcount give too many errors for strain dataset

  #3 opened 8 years ago by liuxianghui
  2

• Could you provide a new ClassifyContigNR.py for new version Diamond search result?

  #2 opened 8 years ago by liuxianghui
  2

• Replace ConfPlot.R

  #1 opened 8 years ago by alneberg
  4