churchlab/UniRep

Issues

• How to I get the embeddings for a list of sequences?

  #30 opened 2 years ago by ajrferrari
  2

• unirep_tutorial.ipynb error

  #31 opened a year ago by miservilla
  0

• Can't start jupyter

  #29 opened 2 years ago by fantasybo49
  0

• maintaining the association between value and sequence

  #27 opened 3 years ago by norakearns
  0

• Using model to predict

  #26 opened 3 years ago by kvetab
  2

• Can this model used to represent a sequence of amino acids, not an entire protein sequence?

  #25 opened 4 years ago by yangning116
  2

• Cannot download the weight files from Ipython

  #23 opened 4 years ago by mkd1996
  8

• Running UniRep and EvoTuning on longer sequences

  #12 opened 4 years ago by 000generic
  2

• data_utils.py, line 137: "destination" misspelled

  #17 opened 4 years ago by andrewfavor95
  0

• Evotuning and red fluorescent proteins

  #11 opened 4 years ago by spark157
  1

• Code to train UniRep model?

  #10 opened 4 years ago by eramudu
  0

• Is "evotuning" supervised or unsupervised?

  #9 opened 4 years ago by dlnp2
  1

• Re-implementation in JAX

  #8 opened 4 years ago by ericmjl
  1

• Making get_rep() faster?

  #4 opened 4 years ago by spark157
  9

• Figure data

  #21 opened 4 years ago by emilymak
  1

• Example code to load evotuned model checkpoint

  #15 opened 4 years ago by cclough
  1

• If possible could the code for evotuning and the weights for eUniRep tuned to TEM-1 beta lactamase be shared?

  #18 opened 4 years ago by ivanjayapurna
  4

• CUDA 10.2 and TF-gpu 2.1 support

  #19 opened 4 years ago by ptynecki
  2

• Diversity in evotuning sequence data

  #24 opened 4 years ago by wjs20
  1

• Is it possible to export a babbler in keras?

  #16 opened 5 years ago by Permoment-95
  1

• Where are the sequences being embedded?

  #14 opened 5 years ago by akmorrow13
  7

• evotuned weights

  #2 opened 5 years ago by spark157
  9

• potential issue for run_gpu_docker.sh

  #7 opened 5 years ago by beef-broccoli
  1

• self._top_final_hidden question

  #6 opened 5 years ago by spark157
  2

• Understanding b._output conceptually

  #5 opened 5 years ago by spark157
  1

• Q: get_rep() difference between babbler1900 and babbler256/64

  #3 opened 5 years ago by spark157
  2

• Does UniRep support representation for any length protein sequence?

  #1 opened 5 years ago by duolinwang
  1