clemaitre

Researcher in Computational Biology at Inria, I develop tools for sequencing data analyses.

Rennes, France

Pinned Repositories

MTG-Link
MTG-Link: Local assembly tool for linked-read data
Language:Python3 2 231
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
Cassis
Detection and refinment of genomic rearrangement breakpoints
Language:Perl00
DeepAn
Annotation of insertion in vcf file which are sequence resolved
Language:Jupyter Notebook00
MinYS_paper_reproductibility
Documentation for the MinYS paper experiments
Language:Shell00
simka
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets.
Language:C++00
DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
Language:Python35 7 3020
MindTheGap
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
Language:C++35 8 1310
simka
Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
Language:C++44 5 3010
SVJedi-graph
SV genotyper for long reads with a variation graph
Language:Python8 2 30

clemaitre/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
clemaitre/Cassis
Detection and refinment of genomic rearrangement breakpoints
Language:Perl00
clemaitre/DeepAn
Annotation of insertion in vcf file which are sequence resolved
Language:Jupyter Notebook00
clemaitre/MinYS_paper_reproductibility
Documentation for the MinYS paper experiments
Language:Shell00
clemaitre/simka
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets.
Language:C++00