cnellington
Computational Biology PhD Student, Carnegie Mellon University
Carnegie Mellon UniversityPittsburgh, PA
Pinned Repositories
AI4Bio-Reading-List
Must-read papers on AI for Biology
AsynchronousBLASTWebApp
A simple React-Django webapp to query DNA sequences against a databank of .fasta files
BIGGDATA-Stats-Modules
Antibody Cluster Analytics
bioscience-python-tutorials
A series of tutorials to introduce bioscience students to a variety of python-based research applications. UW Bioengineering 2019-2020 honors project
CMU-CellSystems-Final
Birth-death models for modeling evolution in finite populations
CMU-Genomics-Final
Modeling cancer evolution from spatial transcriptomics data
Contextualized
An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.
DataGPT
A wrapper for the prompt-debug-plot workflow of data science with GPT
notears-tensorflow2
Reimplementation of NOTEARS in Tensorflow
SampleSpecificDAGs
Framework for estimating the structures and parameters of Bayesian networks (DAGs) at per-sample resolution
cnellington's Repositories
cnellington/Contextualized
An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.
cnellington/bioscience-python-tutorials
A series of tutorials to introduce bioscience students to a variety of python-based research applications. UW Bioengineering 2019-2020 honors project
cnellington/SampleSpecificDAGs
Framework for estimating the structures and parameters of Bayesian networks (DAGs) at per-sample resolution
cnellington/DataGPT
A wrapper for the prompt-debug-plot workflow of data science with GPT
cnellington/notears-tensorflow2
Reimplementation of NOTEARS in Tensorflow
cnellington/AsynchronousBLASTWebApp
A simple React-Django webapp to query DNA sequences against a databank of .fasta files
cnellington/AI4Bio-Reading-List
Must-read papers on AI for Biology
cnellington/CMU-CellSystems-Final
Birth-death models for modeling evolution in finite populations
cnellington/CMU-Genomics-Final
Modeling cancer evolution from spatial transcriptomics data
cnellington/CMU-ML-Final
Graduate Machine Learning Final Project, by Caleb Ellington, Daniel Jeong, and Anush Devadhasan
cnellington/cnellington
cnellington/cnellington.github.io
A beautiful, simple, clean, and responsive Jekyll theme for academics
cnellington/ConPLex
cnellington/ConPLex-screen
Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.
cnellington/contextualized-notears
NO-TEARS as loss for multimodal Contextual Estimation Network
cnellington/daddle
A fun Wordle clone made using React, Typescript, and Tailwind, for Dad on Father's Day 2023
cnellington/DJ-Roomba
scripts to experiment with Spotify's API for personal projects
cnellington/Farkle
Farkle strategies to take the fun out of everything
cnellington/KMeansGeneticMotifConsensusCLI
Kmeans clustering and simple consensus motif finding for finding k-mer motifs in arbitrary sequence data
cnellington/langchain
⚡ Building applications with LLMs through composability ⚡
cnellington/LuckySays
Birthday gift for Steve Li, a script that gives you a little wisdom or motivation whenever you need it.
cnellington/mamba
cnellington/minespeeder
Competitive minesweeper
cnellington/MollyBloom
The best card you never have to play
cnellington/QTL-HaplotypingCLI
Quantitative trait loci analysis CLI and EM-based haplotyping CLI
cnellington/RegulatoryNetworkModelSelector
Bayesian network selector for gene regulatory data
cnellington/sailing-lab.github.io
cnellington/SequenceAlignmentCLI
Protein sequence alignment CLI w/ significance measurement using BLOSUM62
cnellington/snareseq_tf
Multimodal analysis of transcription factor activity using single-cell transcriptome and chromatin accessibility data
cnellington/TweetCompatator