cohenlabUNC/clpipe

Issues

• Project_setup error

  #440 opened 7 months ago by mackenziemitchell
  0

• N_threads not being passed in correctly from the configuration file

  #436 opened 9 months ago by yuvrajjain2003
  0

• GLM Parent Config Reference Issue

  #434 opened a year ago by wasciutto
  0

• Figure out how to index only fMRIPrep func folder with patterns

  #401 opened a year ago by wasciutto
  0

• Create Class-Based Configuration for Batch Options

  #409 opened a year ago by wasciutto
  0

• preprocess gives wrong log value

  #416 opened a year ago by wasciutto
  0

• bids validate logs going to wrong place and None in logs

  #423 opened a year ago by wasciutto
  0

• Temporal Filtering documentation for implementation 3dTproject should be afni_3dTproject

  #431 opened a year ago by wasciutto
  0

• output niftis in clpipe/1.9.0 postprocessing are in Talairach space

  #432 opened a year ago by adcascone
  1

• Refresh Index Failing Even with Correct Permissions

  #420 opened a year ago by wasciutto
  1

• sphere_radius name throwing bug

  #426 opened a year ago by wasciutto
  0

• Enforce Heudiconv < v13.0.0

  #390 opened a year ago by wasciutto
  2

• Add record of project_setup command

  #391 opened a year ago by mackenziemitchell
  2

• Remove Redundancy From Workflow Test Code

  #398 opened a year ago by wasciutto
  2

• Tolerate Taking File Names with Spaces when Submitting Batch Jobs for Main Line Commands[2]

  #425 opened a year ago by wasciutto
  1

• Make inputs to target_acquisitions / target_space / target_task more lenient

  #421 opened a year ago by wasciutto
  0

• Configuration Defaults Fix

  #414 opened a year ago by wasciutto
  0

• heudiconv: logs save to wrong place (point of calling)

  #417 opened a year ago by wasciutto
  1

• Update to Python 3.8 to Use Pybids 16.0

  #418 opened a year ago by wasciutto
  0

• Var referenced before assignment

  #373 opened a year ago by wasciutto
  2

• Confounds settings do not override defaults

  #380 opened a year ago by wasciutto
  0

• Support Wildcard Selection within Scrubbing Step

  #402 opened a year ago by wasciutto
  1

• Create fixture for BIDS dir

  #406 opened a year ago by wasciutto
  0

• Create test for postprocess_image

  #407 opened a year ago by wasciutto
  0

• Wrong Path in Docs

  #410 opened a year ago by wasciutto
  0

• Support Multiple Column Selection for Scrubbing

  #387 opened a year ago by wasciutto
  4

• Document Postprocess2 Step Implementations

  #386 opened a year ago by wasciutto
  0

• Slow Indexing of fMRIPrep Directory

  #395 opened a year ago by wasciutto
  1

• Have config get_default Work Off Project Directory

  #415 opened a year ago by wasciutto
  0

• dcm2bids v3+ incompatible with fMRIprep <= v23

  #412 opened a year ago by wasciutto
  0

• Modality becomes datatype in new BIDS standard

  #411 opened a year ago by wasciutto
  0

• Option overlap_ok not included in configuration

  #382 opened a year ago by wasciutto
  1

• Confound Regression not Working Correctly with Scrubbed Confounds

  #397 opened a year ago by wasciutto
  0

• Scrubbing/Trimming Should Also Modify Mixing File

  #405 opened a year ago by wasciutto
  0

• Set permissions of files/folders created to always be open for group write

  #404 opened a year ago by wasciutto
  0

• Remove use of fMRIPrep Masks as default due to Poor Quality

  #396 opened a year ago by wasciutto
  1

• Add Jess's Variation of ROI Extraction

  #400 opened a year ago by wasciutto
  0

• Group Batch Log Outputs

  #399 opened a year ago by wasciutto
  0

• Document Scrubbing Step

  #384 opened a year ago by wasciutto
  0

• Support Wildcarding For Confound Column Selection

  #385 opened a year ago by wasciutto
  3

• Figure out how to differentiate regressed vs. glm confounds

  #381 opened 2 years ago by wasciutto
  0

• Throw Better Error when Noise Components File Empty

  #375 opened 2 years ago by wasciutto
  0

• Extraction won't work with mask due to 'empty spheres'

  #379 opened 2 years ago by wasciutto
  4

• Add ability to consume non-zipped nii files

  #372 opened 2 years ago by wasciutto
  0

• Include nipype options by default

  #374 opened 2 years ago by wasciutto
  0

• Confounds assumed to have space

  #370 opened 2 years ago by wasciutto
  0

• roi extract: Update Logging

  #377 opened 2 years ago by wasciutto
  0

• roi extract: Update Mask Search Function

  #378 opened 2 years ago by wasciutto
  0

• roi extract: Update to be compatible with fMRIPrep v21+

  #376 opened 2 years ago by wasciutto
  0

• fsl_onset_extract: Update to work with new GLM config file

  #368 opened 2 years ago by wasciutto
  1