Issues
- 0
Issue with `epi.pp.pca` : Unexpected Argument Error
#139 opened by macelik - 1
Installation on Mac M2
#137 opened by philmar1 - 0
- 0
Bug in silhouette score calculation
#134 opened by dhananjay-srivastava - 2
- 1
- 0
Import Error when Importing on Python 3.9
#130 opened by crsct - 1
Type in import of `tss_enrichment_score`
#128 opened by crsct - 0
installation should say python 3.7 else SyntaxError: future feature annotations is not defined
#125 opened by megadesk - 0
- 3
- 2
Error in Generating Methylation Count Matrices
#122 opened by keyingkuang - 1
episcanpy.tl.silhouette calls sklearn.metrics.silhouette_score with wrong arguments
#121 opened by phobos314 - 0
Future plans
#120 opened by PauBadiaM - 1
- 0
- 0
How to generate count matrix in Episcanpy
#110 opened by taopeng1100 - 2
Error with normalize_total()
#109 opened by sjbegg - 0
- 1
In DNA methylation tutorial, the data for matrices construction and secondary processing are not consistant.
#103 opened by qrzhang - 0
- 1
Error of version 0.2.0+7.g709bba8
#70 opened by kridsadakorn - 1
Episcanpy still using scanpy.api
#53 opened by le-ander - 3
Meet UnicodeDecodeError when utilizing gtf file to produce a gene activity matrix
#75 opened by ddb-qiwang - 0
Add function to load gtf file as features
#49 opened by DaneseAnna - 2
- 4
10X compatibility
#85 opened by gaelcge - 1
Error running "epi.ct.save_sparse_mtx"
#90 opened by tzhu-bio - 3
Remove python 2.7 tests
#89 opened by yannikschaelte - 0
About snap2anndata
#83 opened by nigred - 2
import Error
#77 opened by farnoush-shh - 1
- 1
- 13
Problem building scATAC-seq count matrice from bams
#69 opened by hildemann - 0
- 1
Help needed in preprocessing scATAC-seq
#68 opened by alirezaomidi - 1
sequence depth issues in algorithms of LSI, LSA, LDA, PCA for dimension reduction
#60 opened by wangmeijiao - 2
- 1
Incompatibility between the old version of Anndata (0.6.22.post1) and the new one
#63 opened by kridsadakorn - 7
Extremely long runtime bld_mtx_fly()
#57 opened by le-ander - 1
Episcanpy is incompatible with scanpy 1.4.5post3
#50 opened by le-ander - 2
build_mtx_fly tabix value error
#56 opened by le-ander - 1
build_mtx_fly missing shutil import
#55 opened by le-ander - 1
Episcanpy is incompatible with anndata 0.7.1
#51 opened by le-ander - 2
Episcanpy 0.1.8 should require pysam
#52 opened by le-ander - 2
episcanpy does not install / work through any channel of download (conda, pip, git pull)
#54 opened by mvinyard - 1
binarize issues
#44 opened by dawe - 1
- 0
Suggestion: add unit testing
#48 opened by kridsadakorn - 1
Remind: error in function **load_features**
#36 opened by kridsadakorn