common-workflow-language/cwl-upgrader

Issues

• CWL 1.3 - Convert SBGSECRETS to standard secrets

  #170 opened 25 days ago by bkappes
  1

• tests: upgrade all the CWL v1.0 conformance tests and confirm the results

  #87 opened 6 months ago by mr-c
  5

• eventually support re-writing DockerGpuRequirement

  #121 opened 2 years ago by mr-c
  0

• cwl-runner validate fails after upgrade

  #69 opened 3 years ago by BJWiley233
  12

• CommandLineTool field types become illegal after upgrading to v1.2

  #95 opened 3 years ago by YuxinShi0423
  4

• Upgrade a cwl 1.2 workflow fails

  #93 opened 3 years ago by golharam
  2

• [Feature Request] returning packed object instead of dumping to files

  #78 opened 3 years ago by tom-tan
  5

• long form arrays aren't being converted correctly

  #8 opened 3 years ago by jorvis
  2

• upgrading packed document → "No such file or directory: #echo"

  #89 opened 3 years ago by mr-c
  0

• Unifying target version parameter for `upgrade_document`

  #77 opened 3 years ago by tom-tan
  1

• Re-upgrading CWL files

  #75 opened 3 years ago by golharam
  1

• shebang line duplicated

  #68 opened 3 years ago by BJWiley233
  0

• unicode failure on Python 3.5

  #9 opened 3 years ago by jorvis
  1

• Upgrade to v1.1 should un-prefix cwltool:InplaceInputRequirement

  #24 opened 3 years ago by tetron
  1

• CWL v1.1: `cwltool:loadListing` extension req into a unprefixed `LoadListingRequirement`

  #43 opened 3 years ago by mr-c
  1

• Dependabot couldn't authenticate with https://pypi.python.org/simple/

  #46 opened 4 years ago by dependabot-preview
  0

• upgrade to cwl v1.1 should move Workflow level inputBindings to a label, doc, or comment

  #25 opened 5 years ago by mr-c
  0

• Imports inside the requirements block cause cwl-upgrader to fail

  #23 opened 5 years ago by multimeric
  1

• add draft-2 to v1.x support

  #14 opened 6 years ago by mr-c
  0

• Workflow missing required 'in' and 'out' fields

  #11 opened 7 years ago by jorvis
  2

• Expected <block end>, but found '<scalar>'

  #10 opened 7 years ago by jorvis
  1

• remove or upgrade remaining pre-v1.0 CWL documents

  #7 opened 7 years ago by mr-c
  1

• Module version requirements don't match cwl-runner (ruamel.yaml)

  #2 opened 8 years ago by jorvis
  1