cov-lineages/pangoLEARN

Issues

• versionning scheme incompatible with setuptools 66

  #98 opened 2 years ago by emollier
  0

• New data version

  #92 opened 2 years ago by EricFournier3
  1

• todo: conservatively recalculate sites and sequences when training

  #91 opened 2 years ago by aineniamh
  0

• Problem with data update

  #90 opened 2 years ago by EricFournier3
  2

• Error in rule pangolearn after 04/09/2022 update

  #84 opened 3 years ago by egenomics
  6

• pangoLEARN seems to detect only a third of XEs

  #81 opened 3 years ago by corneliusroemer
  3

• Typo "2021" in latest release name?

  #83 opened 3 years ago by Mike-Honey
  2

• Dependency quokka to run the training pipeline

  #74 opened 3 years ago by fischer-hub
  2

• 5% of BA.1.1 carrying the R346K mutations are classified as BA.1

  #80 opened 3 years ago by wodanaz
  4

• detect the recombinant lineage (pango-designation v1.2.133)

  #75 opened 3 years ago by alantsangmb
  2

• __init__.py has wrong version data

  #72 opened 3 years ago by aknijn
  3

• True B.1 sequences from early 2021 falsely classified as BA.1.1

  #67 opened 3 years ago by hoelzer
  8

• Release 2022-01-05 produces generic lineage for Omicron

  #63 opened 3 years ago by quaeler
  12

• Many false positives for AY.39 using usher mode

  #48 opened 3 years ago by corneliusroemer
  4

• Pangolearn Update

  #53 opened 3 years ago by santoshe1
  2

• Why is Usher mode not made primary mode for GISAID etc?

  #32 opened 3 years ago by corneliusroemer
  19

• Dead Link in Releases and Cov-Lineages.org page

  #30 opened 3 years ago by DBecker7
  4

• When do you plan to release again?

  #31 opened 3 years ago by corneliusroemer
  1

• maintenance of list for latest AY sub-lineage defining mutations

  #29 opened 3 years ago by matt-sd-watson
  3

• C.36.3 and AY.2 not found

  #21 opened 3 years ago by AKWB
  2

• B.1.1.397 scoring metrics

  #20 opened 3 years ago by victormaricato
  1

• Training FASTAs

  #24 opened 3 years ago by victormaricato
  1

• decision_tree_rules.txt rules seem wrong

  #13 opened 3 years ago by danielmoney
  12

• Lineage recall report is not updated

  #8 opened 3 years ago by aretchless
  1

• pangoLEARN update

  #18 opened 3 years ago by santoshe1
  5

• pangoLEARN python code causes flake8 issue

  #15 opened 3 years ago by pvanheus
  1

• Problem with lineage P.1.2

  #14 opened 3 years ago by aplamarca
  2

• Would you add the VUI B.1.617 please?

  #10 opened 3 years ago by xzhub
  3

• Error after the latest release 2021-04-28

  #11 opened 3 years ago by animesh-workplace
  5

• B.1.562.3 not found

  #6 opened 3 years ago by AKWB
  1

• pangolin version in __init__.py is not updated

  #9 opened 3 years ago by AKWB
  2

• show pango-designation version when using pangolin/pangoLEARN

  #7 opened 4 years ago by TYMichaelsen
  2

• The `__version__` is not updated for 2021-04-23

  #5 opened 4 years ago by philiptzou
  1

• header in the new decision_tree_rules.txt stored twice(-)

  #4 opened 4 years ago by igortru
  0

• supporting data request

  #1 opened 4 years ago by AKWB
  1

• which reference used in decision tree?

  #3 opened 4 years ago by igortru
  1

• 2021-01-11 release

  #2 opened 4 years ago by andersgs
  2