datacarpentry/shell-genomics

Issues

• Lacking setup page

  #358 opened 5 months ago by BenjaminSchwessinger
  0

• Grep output doesn't match what's in the lesson in a way that breaks the example

  #316 opened 3 years ago by JCSzamosi
  7

• Introducing the shell: The order of the commands

  #356 opened 8 months ago by ATCGpsy
  0

• shell-genomics/05-writing-scripts -incorrect output displayed for $ ls -l bad-reads-script.sh

  #317 opened 9 months ago by Parcelli
  1

• Finish bad sequences calculation

  #344 opened 10 months ago by bkmgit
  1

• Lesson contribution - instructor checkout - Working with files and directories

  #319 opened a year ago by Elahep
  1

• Add discussion of SFTP

  #352 opened a year ago by p-j-smith
  1

• Transfering local to cloud drop-down menu broken

  #348 opened a year ago by sstevens2
  1

• sftp transfer software

  #290 opened 4 years ago by sstevens2
  13

• 03-working-with-files permission file images

  #308 opened a year ago by NadineBestard
  3

• Add a Tip for command line navigation as part of "Naviational Shortcuts" in episode 2

  #334 opened 2 years ago by jlchang
  3

• Episode 6. Addition of a "cut" command to remove line numbers in history

  #318 opened 3 years ago by ckigenk
  2

• Introducing the Shell - Overview language - local vs remote

  #328 opened 2 years ago by awnorowski
  1

• Introduction to shell: How to exit the shell

  #332 opened 2 years ago by mariehidjo
  1

• Addition of a *bin* or *scripts* directory in episode 6. Project organization

  #347 opened a year ago by GeorgiaBreckell
  1

• Legacy Jekyll template `include gh_variables.html` remains in the front page

  #340 opened a year ago by cpauvert
  0

• Links need to be fixed in CONTRIBUTING.md

  #339 opened a year ago by tobyhodges
  0

• Transition To Workbench in May

  #336 opened 2 years ago by zkamvar
  10

• Typos in Introducing the Shell lesson, How to access the shell section

  #329 opened 2 years ago by awnorowski
  1

• Inconsistent usage of PuTTY/Git Bash (for Windows users)

  #312 opened 2 years ago by ac1513
  3

• A typo in the introduction part

  #326 opened 2 years ago by RanZhou
  2

• shell-genomics/02-the-filesystem - hidden directory exercise

  #313 opened 3 years ago by duanyuncheng
  1

• Redirection - Adding an example before determining read quality

  #314 opened 3 years ago by kswichte
  0

• "it" is too imprecise in some cases

  #310 opened 3 years ago by jsgro
  3

• Typo in solution in the Project Organization episode

  #305 opened 4 years ago by dirostri
  1

• 05-writing-scripts - use command line arguments

  #293 opened 4 years ago by Coayala
  4

• Lesson contribution - instructor checkout – Navigating Files and Directories

  #301 opened 4 years ago by ZoeYang2020
  4

• Lesson contribution - instructor checkout – Navigational shortcuts

  #298 opened 4 years ago by upendrabhattarai
  3

• Error in wc -l output of "Redirecting output" section example ?

  #289 opened 4 years ago by olisand
  9

• Typo and confusion in PSCP command

  #297 opened 4 years ago by JesseKerkvliet
  1

• Lesson contribution - instructor checkout - rename command

  #296 opened 4 years ago by NextGenBioinformatics
  2

• Lesson contribution- Combining flags for shell commands- Instructor Checkout

  #267 opened 4 years ago by biomebox
  1

• Lesson Contribution - Christina Straub

  #255 opened 4 years ago by sheraaronhurt
  2

• Lesson contribution – Removing potentially redundant content - Instructor Checkout

  #287 opened 5 years ago by jpaganini
  3

• Lesson contribution - Redirection

  #284 opened 5 years ago by brunoasm
  2

• MacOS will now default to ssh

  #251 opened 5 years ago by ErinBecker
  2

• lesson contribution - submitted by email

  #256 opened 5 years ago by ErinBecker
  4

• Adding a few links to resources - background knowledge

  #247 opened 5 years ago by mstagliamonte
  1

• Nav Files and Dir: reference to root dir with no prior definition

  #269 opened 5 years ago by AmyStonelake
  2

• Explanation needed for use of # in the shell

  #268 opened 5 years ago by iwema
  2

• Introducing the Shell - "man" command

  #271 opened 5 years ago by waydeveldman
  4

• Project Organization - Navigating in Nano

  #270 opened 5 years ago by waydeveldman
  2

• Suggestion for Adding `cut` to "Writing Scripts and Working with Data"

  #272 opened 5 years ago by dr-aheydari
  6

• feedback from University of Chicago - submitted by email

  #257 opened 5 years ago by ErinBecker
  2

• Introducing 'touch'

  #249 opened 5 years ago by aschuerch
  2

• issue for instructor checkout - submitted by email

  #259 opened 5 years ago by ErinBecker
  3

• additional steps

  #250 opened 5 years ago by aschuerch
  0

• Add note/tip on hot-key for terminal clearing (contribution for instructor training)

  #265 opened 5 years ago by sirselim
  3

• topic for the repository

  #261 opened 5 years ago by dpshelio
  3

• touch command and few extra steps

  #246 opened 5 years ago by cmavian
  1