davismcc

davismcc's Stars

• cookiecutter/cookiecutter

  A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

  Language:Python22.5k2318662k

• lmcinnes/umap

  Uniform Manifold Approximation and Projection

  Language:Python7.4k127790806

• nteract/nteract

  📘 The interactive computing suite for you! ✨

  Language:TypeScript6.2k1491.7k550

• nteract/papermill

  📚 Parameterize, execute, and analyze notebooks

  Language:Python6k86403429

• raghakot/keras-vis

  Neural network visualization toolkit for keras

  Language:Python3k71214661

• thomasp85/patchwork

  The Composer of ggplots

  Language:R2.5k46349163

• randy3k/radian

  A 21 century R console

  Language:Python2k2643376

• EmilHvitfeldt/r-color-palettes

  Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

  Language:R1.5k3653139

• KrishnaswamyLab/PHATE

  PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

  Language:Python470187773

• KrishnaswamyLab/MAGIC

  MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

  Language:Jupyter Notebook3412214397

• nanoporetech/tombo

  Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

  Language:Python2303744954

• pinellolab/STREAM

  STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

  Language:Jupyter Notebook1731614648

• pachadotdev/analogsea

  Digital Ocean R client

  Language:R155818524

• nygenome/lancet

  Microassembly based somatic variant caller for NGS data

  Language:C153145733

• cloudyr/googleComputeEngineR

  An R interface to the Google Cloud Compute API, for launching virtual machines

  Language:R1521116441

• bes-dev/thinkpad_x1_carbon_6th_linux

  Linux configuration guide for Thinkpad x1 Carbon 6th Gen (2018)

  Language:Shell1468318

• mohuangx/SAVER

  Single-cell RNA-seq Gene Expression Recovery

  Language:R11044118

• ewels/AWS-iGenomes

  Documentation and description of AWS iGenomes S3 resource.

  Language:HTML10791812

• snakemake-workflows/single-cell-rna-seq

  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.

  Language:R978544

• tvganesh/cricketr

  This package can be used to analyze performances of cricketers based on stats from ESPN Cricinfo

  Language:R6212748

• MarioniLab/DropletUtils

  Clone of the Bioconductor repository for the DropletUtils package.

  Language:R54128827

• nickjer/singularity-rstudio

  RStudio Server in a Singularity container

  Language:Python546941

• diazlab/scell

  Single-CELL rna-seq analysis software

  Language:MATLAB386111

• aradenbaugh/radia

  RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

  Language:Python2941011

• fernandomayer/spacemacs

  Spacemacs configuration files and private layers

  Language:Emacs Lisp245415

• debsin/dropClust

  Version 2.1.0 released

  Language:R23848

• cellgeni/rnaseq-old

  RNASeq pipeline suitable for bulk and SmartSeq2 protocols

  Language:Groovy2

• denis-yuen/icy-blackberry

  Example command line tool for the HCA Hackathon

  Language:Jupyter Notebook1100