pinellolab/STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Jupyter NotebookAGPL-3.0
Issues
- 1
error in detect_leaf_markers
#150 opened by xyang2uchicago - 0
error when calling plot_stream()
#149 opened by xyang2uchicago - 0
dimension_reduction failed for method='se'
#148 opened by xyang2uchicago - 0
Error in glue(.Internal(R.home()), "library", "base", "R", "base", sep = .Platform$file.sep)
#147 opened by TakashiKoyama - 0
A known bug related to `select_variable_genes`
#146 opened by SummerColdWind - 0
- 1
Error when runing extend_elastic_principal_graph
#144 opened by HarrisHan2k - 0
Error in st.cal_qc
#137 opened by tianchen2019 - 1
dimension_reduction jupyter kernel dies
#143 opened by vjbaskar - 6
Stream 1.1 Error
#136 opened by bellenger-l - 0
STREAM2 not found in conda channel
#142 opened by Desi0 - 0
Color palette in plot_flat_tree
#141 opened by TarekGharsalli - 2
The first label is missing while plotting
#140 opened by baigal628 - 0
mapping scATAC-seq data with precomputated UMAP
#139 opened by ccshao - 1
st.plot_stream error
#138 opened by l-magnificence - 4
import stream as st st.__version__
#129 opened by sailseem - 2
Issue with selecting cell types in the STREAM
#135 opened by Pawan291 - 11
Stream remove label ?
#130 opened by TarekGharsalli - 9
same notebook gives different stream plots
#131 opened by crazyhottommy - 2
- 8
h5Seurat format
#117 opened by wajm - 3
a legend bug
#122 opened by wangli-sh - 10
st.add_cell_labels error: ValueError: Length mismatch
#128 opened by XYZuo - 1
value of the legend
#127 opened by yxiao832 - 1
`uns_key` has no default`
#126 opened by BioTechTimy - 0
Difference between branch and leaf branch ?
#125 opened by bellenger-l - 0
stream container issue
#124 opened by xiaowenchenjax - 1
Conda Installation Problems on Ubuntu 20.04
#123 opened by saxovocal - 9
Map new data when using Seurat object
#120 opened by PeggySze - 1
- 4
stream import in conda env
#119 opened by ajitjohnson - 1
dot size option?
#118 opened by wajm - 2
plot function: branch or leaf
#116 opened by MingBit - 17
colors in the plot function.
#114 opened by MingBit - 1
Error with st.plot_stream()
#115 opened by aradley - 0
stream web go error in docker
#113 opened by Roger-GOAT - 1
Plot Gene Expression
#112 opened by babramso - 5
map_new_data align two sets poorly in umap.
#109 opened by ccshao - 2
- 3
Error running detect_transition_markers
#108 opened by ccruizm - 8
st.map_new_data use subset of var_genes?
#105 opened by ccshao - 2
read in loom and get UnicodeDecodeError
#107 opened by crazyhottommy - 1
Too big memory needed in st.normalize
#106 opened by liushang20 - 10
running peak analysis
#104 opened by sylestiel - 26
Seurat object
#100 opened by wajm - 18
Generation of adata.h5ad by using motif specific command line and Cell Ranger output files
#101 opened by sylestiel - 4
legend text missing
#103 opened by ccshao - 1
multicore option
#102 opened by wajm - 3
Increase the line size in STREAM plot
#99 opened by smk5g5 - 3