dms-viz/dms-viz.github.io

Issues

• Review for JOSS

  #58 opened 6 months ago by jkanche
  2

• Network error loading protein structures from the RCSB

  #94 opened 6 months ago by WillHannon-MCB
  0

• Floored effect coloring sometimes is carried over between datasets

  #91 opened 7 months ago by Caleb-Carr
  2

• hyperlinks in Markdown description not colored

  #90 opened 7 months ago by jbloom
  2

• Menu state takes priority over the default values in the config file

  #89 opened 8 months ago by WillHannon-MCB
  0

• Color for wild-type score

  #85 opened 8 months ago by afrubin
  1

• Issues with state between datasets

  #86 opened 8 months ago by WillHannon-MCB
  0

• Docs typo?

  #84 opened 8 months ago by jgallowa07
  1

• minimize and help icons are off the sidebar

  #63 opened 9 months ago by WillHannon-MCB
  1

• Provide tooltips to explain the line plots on top and the interactions, especially for users lacking domain knowledge in protein space

  #59 opened 9 months ago by WillHannon-MCB
  1

• Explore the option of automatically focusing the protein viewer when clicking on a data point

  #60 opened 9 months ago by WillHannon-MCB
  1

• I would suggest separating the application code from its deployment to github pages; the repo can get crowded once there are multiple versions (v0 directories)

  #65 opened 9 months ago by WillHannon-MCB
  1

• Expanding filter sites from the left sidebar doesn't show anything for the default example (wasn't sure how that gets populated), if there are no filters, let the user know

  #61 opened 10 months ago by WillHannon-MCB
  1

• Add default filters

  #74 opened 10 months ago by afrubin
  1

• Consider placing key interaction instructions above the plots for better user guidance

  #64 opened 10 months ago by WillHannon-MCB
  1

• consistent color coding between the line plot and 3D visualization to improve user understanding/mapping to colors

  #81 opened 10 months ago by WillHannon-MCB
  1

• documentation mentions a component called `dms-view`, but i can't find a reference to this anywhere

  #82 opened 10 months ago by WillHannon-MCB
  1

• One of the data points is highlighted by a larger black circle, can you explain what the significance of this data point is and its relation to the other visualizations?

  #80 opened 10 months ago by WillHannon-MCB
  1

• Support non-numeric sites in the PDB

  #78 opened a year ago by WillHannon-MCB
  1

• Some of the sections in the chart options are helpful to understand the visualization itself, for example, the legend for antibody or the toggle to display mutational counts

  #62 opened a year ago by WillHannon-MCB
  1

• Also consider displaying the app version on the browser, helps users and developers debug issues

  #67 opened a year ago by WillHannon-MCB
  1

• Include meta tags in the HTML, especially for description and title

  #68 opened a year ago by WillHannon-MCB
  1

• Color options

  #69 opened a year ago by afrubin
  1

• Select All Sites should be a button

  #71 opened a year ago by afrubin
  1

• Filter options is blank in the example dataset?

  #70 opened a year ago by afrubin
  1

• Reset structure doesn't work?

  #72 opened a year ago by afrubin
  1

• Add median score

  #73 opened a year ago by afrubin
  1

• Separate development and deployment into separate workflows

  #66 opened a year ago by WillHannon-MCB
  1

• Unset Default Filter Values Reset on Dataset Change Leading to Inaccurate Visualizations

  #57 opened a year ago by WillHannon-MCB
  0

• Optionally provide markdown descriptions in the JSON specification

  #55 opened a year ago by WillHannon-MCB
  0

• Allow users to select points on the protein by clicking

  #53 opened a year ago by WillHannon-MCB
  0

• Change the default summary metric to the average at each site

  #50 opened a year ago by WillHannon-MCB
  0

• Protein color scale isn't changing when filters are applied

  #51 opened a year ago by WillHannon-MCB
  0

• Change the default dataset to something more meaningful

  #49 opened a year ago by WillHannon-MCB
  0

• Strange protein representation

  #44 opened a year ago by WillHannon-MCB
  0

• Show all non-carbon hydrogens

  #46 opened a year ago by WillHannon-MCB
  0

• Add bond orders to the structures

  #45 opened a year ago by WillHannon-MCB
  0

• Add a more sensible default for flooring the data

  #42 opened a year ago by WillHannon-MCB
  0

• More sensible color scale domain

  #43 opened a year ago by WillHannon-MCB
  0

• Add optional bounds to the filters

  #40 opened a year ago by WillHannon-MCB
  0

• Make it possible to set the negative color

  #38 opened a year ago by WillHannon-MCB
  0

• Add a global description

  #39 opened a year ago by WillHannon-MCB
  0

• Add a coloring option for ligands to show individual molecules

  #35 opened a year ago by WillHannon-MCB
  0

• Implement versioning using routes

  #37 opened a year ago by WillHannon-MCB
  2

• Add optional titles to the main plot

  #36 opened a year ago by WillHannon-MCB
  0

• Add more structure representations to the tool

  #32 opened a year ago by WillHannon-MCB
  0

• The initial size of the protein isn't correctly determined on page load

  #34 opened a year ago by WillHannon-MCB
  1

• Structure should reload if dataChains are different between datasets

  #31 opened a year ago by WillHannon-MCB
  0

• Change the numbering on the structure tooltip

  #33 opened a year ago by WillHannon-MCB
  0

• Wildtype amino acid label issue in certain datasets

  #30 opened a year ago by WillHannon-MCB
  0