Pinned Repositories
scTenifoldKnk
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
scTenifoldNet
A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
L1000-TNBC
Supporting information for "Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures"
mtProportion
Supporting information for 'Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA sequencing data quality control'
Peptides
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
rPanglaoDB
An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
SCORPION
Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomic data"
retriever
Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
SCORPION
Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks
dosorio's Repositories
dosorio/Peptides
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
dosorio/rPanglaoDB
An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
dosorio/SCORPION
Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomic data"
dosorio/mtProportion
Supporting information for 'Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA sequencing data quality control'
dosorio/L1000-TNBC
Supporting information for "Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures"
dosorio/scTransferLearning
Supporting information for "Drug combination prioritization for cancer treatment using single-cell RNA-seq based transfer learning"
dosorio/utilities
Some functions in R
dosorio/undergraduateThesis
Analysis of potential membrane disruption and stability of antimicrobial cationic peptides by molecular dynamics simulations
dosorio/STAT636
Homeworks
dosorio/SuperCell
Coarse-graining of large single-cell RNA-seq data into super-cells
dosorio/Beeline
BEELINE: evaluation of algorithms for gene regulatory network inference
dosorio/dosorio
dosorio/dosorio.github.io
dosorio/GENE613
Homeworks and Exams
dosorio/GENE638
Homeworks and Exams
dosorio/LCL_scRNA-seq
scRNA-seq with LCLs - Three cell line samples sequenced: (1) GM12878, (2) GM18502, and (3) the 1:1 mixture of the two
dosorio/ManifoldWarping
Code for the AAAI 2012 Manifold Warping paper: http://people.cs.umass.edu/~ccarey/pubs/ManifoldWarping.pdf
dosorio/manuscripts
dosorio/masterThesis
Identifying proteins and metabolic pathways associated with the neuroprotective response mediated by tibolone in astrocytes under an induced inflammatory model.
dosorio/miloR
R package implementation of milo for testing differentially abundant neighbourhoods
dosorio/rTensor
rTensor v1.2
dosorio/STAT646
dosorio/VIBS613
Homeworks