esrud/GONE

Issues

• Weird GONE result for qqradseq data

  #47 opened 2 months ago by tanmanpp
  1

• Unable to run successfully

  #46 opened 2 months ago by cht-jk
  8

• Too few bin

  #45 opened 3 months ago by ModiShrushti
  9

• Issue with dividing ped file into chromosomes

  #44 opened 4 months ago by ColanGB
  4

• Error running macOS example data: example.ped not being read correctly?

  #43 opened 5 months ago by Ali-Hudson
  4

• can I use GONE for ddRAD data without reference genome?

  #42 opened 5 months ago by YuanshuPu
  1

• Error running the example data

  #13 opened 2 years ago by luuciasainz
  2

• The error "Specify a valid code for type of genotyping data (0, 1 or 2)." caused by non-obvious limits of Maximum variant number

  #41 opened 7 months ago by AprilYUZhang
  0

• Unable to run GONe with >70.000 SNPs pr chromosome

  #40 opened 7 months ago by auNathalie
  2

• Recombination rate

  #39 opened 7 months ago by ltalignani
  1

• The OUTPUT file show only 9 chr and result a litle bit weird.

  #37 opened 7 months ago by nat6an
  1

• Using LD estimates as input

  #38 opened 7 months ago by apwilder
  1

• Advice on GONE analysis of matched modern and historical data?

  #36 opened 8 months ago by andrewSharo
  1

• Help understanding the output, NSNP_monomorphic

  #34 opened 9 months ago by auNathalie
  5

• "Format error in file outfileLD" when running GONE

  #31 opened 8 months ago by andrewSharo
  4

• Questions about the unit of recombination rates in map file

  #35 opened 8 months ago by fuqi2515
  2

• Specify a valid code for type of genotyping data (0, 1 or 2).

  #30 opened 9 months ago by auNathalie
  2

• Support for non-human chromosome names - Confidence interval for geometric mean calculated

  #33 opened 9 months ago by ltalignani
  1

• Impossible to run on MacOS X - Mac M1Pro

  #32 opened 9 months ago by ltalignani
  1

• Chromosome name causing run issues?

  #19 opened 2 years ago by elizeng
  12

• Issue of RUNNING ANALYSIS OF CHROMOSOMES ...

  #29 opened a year ago by mimingcui
  5

• Erroe about LD calculation

  #28 opened a year ago by liuze955
  5

• more SNPs than GONE allowed, and should sex Chr be removed during analysis?

  #25 opened a year ago by QianghuiZhu
  2

• Questions about input data/results interpretation

  #23 opened 2 years ago by quinn-ca
  4

• Can we use the jackknife approach with individuals when estimating GONE to get some kind of confidence interval?

  #27 opened a year ago by Wennie-s
  1

• Is GONE suitable for estimating Ne for haploid species?

  #24 opened 2 years ago by jayceejiao
  1

• backward in time

  #26 opened a year ago by cfz1998
  2

• Working with small sample sizes

  #22 opened 2 years ago by pepurquin
  1

• Astronomical increases in 5th generation

  #21 opened 2 years ago by fdrive98
  1

• Permission denied - example data

  #16 opened 2 years ago by ndussex
  3

• Ceiling or maximum Ne

  #20 opened 2 years ago by andreaswallberg
  1

• Segmentation fault & argument list too long

  #17 opened 2 years ago by johannanvs
  9

• running time is too long

  #18 opened 2 years ago by xuefenfei712
  1

• Error running my data

  #14 opened 2 years ago by qinshengyuan
  4

• GONE not recognizing multiple samples

  #15 opened 2 years ago by Hjorvik
  4

• Generation maximum

  #12 opened 2 years ago by OKersten
  1

• Error on sample size number

  #11 opened 2 years ago by kostasgalexiou
  4

• Segmentation fault with example files on a Linux server

  #10 opened 2 years ago by ChrystelleDelord
  3

• Got signal 11 error when analyzing my test data

  #4 opened 3 years ago by taishudayo
  5

• Example does not work?

  #5 opened 3 years ago by jydu
  7

• GONE not running: Says too few bins

  #6 opened 3 years ago by mwersebe
  2

• GONE detect zero sample size -- 'Specify a sample size larger than 1.'

  #9 opened 3 years ago by sagitaninta
  2

• Wrong data type, strange sample size

  #8 opened 3 years ago by OKersten
  5

• Wrong data type when running "./PROGRAMMES/GONE"

  #2 opened 4 years ago by QianXiaobo
  5

• error xargs bash terminated by signal 11

  #7 opened 3 years ago by hmoral
  3

• Core dumped

  #1 opened 4 years ago by RenzoTale88
  14

• LD_SNP_REAL3 breaks if sample name contains string "-9"

  #3 opened 4 years ago by jessicachung
  2