Not progressing

[nahmedraja]

Using "slaMEM" to find MEMs in human reference genome hg19 (3.2 Gigabytes). I executed the following command:

./slaMEM -l 17 -b -n ../bio_data/gnome/hg19/slamem/hg19.fna query.fna

query.fna contains a single sequence of 3119 bases. The program is "Building Sampled LCP Array" and not progressing for the last 10 hours or so. The program is executing for nearly 24 hours now.