fls-bioinformatics-core/pegs

Issues

• Documentation doesn't specify the input format for 'mk_pegs_interval'

  #52 opened 2 years ago by pjbriggs
  0

• mk_pegs_intervals: update to make agnostic to input format

  #55 opened 2 years ago by pjbriggs
  0

• Matplotlib backend is only set to non-interactive mode if 'DISPLAY' is unset

  #53 opened 2 years ago by pjbriggs
  0

• PEGS crashes when input "files" are actually directories or distances

  #47 opened 3 years ago by pjbriggs
  0

• PEGS must be installed into a new conda environment

  #48 opened 3 years ago by pjbriggs
  0

• Add PEGS to bioconda

  #39 opened 3 years ago by pjbriggs
  2

• Add citation information to the documentation and program

  #3 opened 3 years ago by pjbriggs
  0

• Improve how peak sets and gene lists are supplied on command line

  #36 opened 3 years ago by pjbriggs
  1

• Allow user to adjust heatmap colours and labels

  #38 opened 3 years ago by pjbriggs
  1

• Improve error detection/reporting if TADs 'file' is a directory

  #18 opened 3 years ago by pjbriggs
  0

• PEGS fails reading in data files if '.DS_Store' file is also present in the data directory

  #35 opened 3 years ago by pjbriggs
  0

• Allow different formats for output heatmap (e.g. SVG, PDF)

  #37 opened 3 years ago by pjbriggs
  1

• Drop support for Python 2.7

  #26 opened 3 years ago by pjbriggs
  0

• Add support for Python 3.9

  #24 opened 3 years ago by pjbriggs
  0

• Update numpy and scipy dependencies

  #25 opened 3 years ago by pjbriggs
  1

• Broken 'bedtools' auto-installation

  #27 opened 3 years ago by pjbriggs
  0

• Enable automated testing from Github

  #17 opened 3 years ago by pjbriggs
  1

• Make "quick start" instructions in README consistent with the main documentation

  #13 opened 4 years ago by pjbriggs
  0

• Update "licensing" information in the README

  #14 opened 4 years ago by pjbriggs
  0

• Add heatmap example to the documentation

  #4 opened 4 years ago by pjbriggs
  0

• RuntimeError running PEGS under Mac OSX

  #5 opened 4 years ago by pjbriggs
  2

• Collect and use all files in the 'clusters' directory

  #10 opened 4 years ago by pjbriggs
  0

• Add CONTRIBUTING document

  #2 opened 4 years ago by pjbriggs
  0

• Add licence

  #1 opened 4 years ago by pjbriggs
  0