gaolabtools/scNanoGPS
Single cell Nanopore sequencing data for Genotype and Phenotype
PythonNOASSERTION
Issues
- 7
reporter_SNV problem
#32 opened by cariocow - 2
- 4
difference between the number of sum of UMI counts in CB_counting.tsv and the numbers of result counting in scanner.log.txt
#33 opened by myanofgintmd - 3
matrix_SNV.raw.vcf.gz unzipped in Step 5
#31 opened by oscargamarra - 30
- 2
Cannot set up scNanoGPS environment
#30 opened by JThomasWatson - 5
error message at the end of "5.4 Generate final summary table", low java memory.
#28 opened by myanofgintmd - 1
Problem when running reporter_SNV.py
#25 opened by cariocow - 1
- 2
summary.txt of example input data
#29 opened by myanofgintmd - 2
- 3
"edditing_distance" option in scanner.py
#23 opened by myanofgintmd - 2
request of an option to output unassigned read fastq file at the scanner and assigner process
#24 opened by myanofgintmd - 11
Scanner log explanation
#20 opened by chuckzzzz - 2
Curator Counting Table Not Generated
#22 opened by BenneyMRArgue - 5
Error during scanner
#19 opened by BenneyMRArgue - 1
Minimap2 parameters and secondary alignments
#18 opened by Prakrithi-P - 2
Questions on running the example data
#17 opened by madnessfish - 1
Low quality reads filtering
#16 opened by chuckzzzz - 1
HELP - report_expression
#15 opened by reJELIN - 1
curator.py error
#13 opened by zhipengliux - 6
Curator - IndexError: list index out of range
#14 opened by reJELIN - 1
- 2
Curator script taking huge time
#11 opened by TR13 - 1
One UMI shared by two reads simultaneously
#10 opened by kir1to455 - 1
Running time of scNanoGPS v1.1 assigner.py
#9 opened by shiauck - 8
Split the fastq file into 24 chromosomes
#8 opened by kir1to455 - 1
IsoSeq and MASseq
#7 opened by yoavhadas - 3
suggestion - ressources needed
#6 opened by reJELIN - 1
- 16
Error while testing currator.py
#4 opened by alihamraoui - 1
- 1
Weird behaviour - assigner.py
#3 opened by davidebolo1993 - 2
Can we setup the length for Scanner.py
#1 opened by wuy24