genome-nexus/genome-nexus-importer
Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
PythonMIT
Issues
- 0
Pfam domain type should be integer
#79 opened by leexgh - 0
Fix critical security vulnerabilties in v0.27
#76 opened by pvannierop - 0
import gnomad data
#72 opened by jjgao - 0
- 10
Hotspots data not grch38 compatible
#58 opened by pieterlukasse - 1
- 0
- 0
Env var REF_ENSEMBL_VERSION is ignored when mongo data is initialized (Dockerfile)
#46 opened by zimnyx - 1
- 0
Simplify makefile gzip/gunzip
#44 opened by inodb - 0
Conda environment for import pipeline
#25 opened by SRodenburg - 0
Update PFAM to version 32
#26 opened by inodb - 6
Transcript analysis (Grch37/38) - Log
#31 opened by zhx828 - 3
Support mouse annotations
#22 opened by inodb - 0
entrez_gene_id missing
#18 opened by inodb - 0
entrez_gene_id stored as float in export/
#11 opened by inodb - 1
Import Cancer Hotspots Data
#6 opened by onursumer - 0
Add testing for generation of ensembl json
#2 opened by inodb