giacomofiorin

giacomofiorin's Stars

• mobile-shell/mosh

  Mobile Shell

  Language:C++12.6k216917736

• openzfs/zfs

  OpenZFS on Linux and FreeBSD

  Language:C10.6k4398.3k1.7k

• rocky-linux/rocky

  Rocky Linux is a community enterprise Operating System designed to be 100% bug-for-bug compatible with Enterprise Linux created in response to the effective discontinuation of CentOS.

  9.6k5080354

• OpenSC/OpenSC

  Open source smart card tools and middleware. PKCS#11/MiniDriver/Tokend

  Language:C2.6k1451.4k734

• lammps/lammps

  Public development project of the LAMMPS MD software package

  Language:C++2.2k1171.1k1.7k

• openmm/openmm

  OpenMM is a toolkit for molecular simulation using high performance GPU code.

  Language:C++1.5k832.8k523

• MDAnalysis/mdanalysis

  MDAnalysis is a Python library to analyze molecular dynamics simulations.

  Language:Python1.3k412.2k650

• oneapi-src/oneDPL

  oneAPI DPC++ Library (oneDPL) https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/dpc-library.html

  Language:C++72137235113

• generatebio/chroma

  A generative model for programmable protein design

  Language:Python67975490

• NoMoreFood/putty-cac

  Windows Secure Shell Client With Support For Smart Cards, Certificates, & FIDO Keys

  Language:C4823213343

• Colvars/colvars

  Collective variables library for molecular simulation and analysis programs

  Language:C++2091936057

• Becksteinlab/GromacsWrapper

  GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).

  Language:Python1681216353

• paduagroup/fftool

  Tool to build force field input files for molecular simulation

  Language:Python147141158

• Amber-MD/cpptraj

  Biomolecular simulation trajectory/data analysis.

  Language:C++1371440664

• Eigenstate/vmd-python

  Installable VMD as a python module

  Language:C13393625

• GrossfieldLab/loos

  LOOS: a lightweight object-oriented structure analysis library

  Language:C++122164926

• akohlmey/fastermath

  A library of optimized math functions targeted at 32-bit and 64-bit x86 Linux systems

  Language:C26708

• jhenin/qwrap

  Fast PBC wrapping and unwrapping for VMD

  Language:C++23653

• Lucy-Forrest-Lab/HDXer

  HDXer is a package to compute Hydrogen-Deuterium exchange data from biomolecular simulations, compare to experiment, and perform ensemble refinement to fit a structrual ensemble to the experimental data

  Language:Python17696

• Colvars/examples

  Example files for Colvars module: https://github.com/Colvars/colvars

  Language:Rich Text Format12505

• Lucy-Forrest-Lab/AlignMe

  Pairwise alignment of membrane protein sequences

  Language:C++6430

• Colvars/gromacs

  Colvars-patched GROMACS releases; CI disabled until it is fixed in standard GROMACS

  Language:C++4520

• Lucy-Forrest-Lab/EncoMPASS-containers-deps

  Singularity definition files for development and maintenance of the EncoMPASS database. Does not contain any scientific software: only Linux packages or libraries needed for their installation.

  4200

• MOSAICS-NIH/MOSAICS

  A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems.

  Language:C++4241

• Colvars/lammps

  Clone of the main LAMMPS repository containing an updated Colvars module.

  Language:C++2300