haotianteng/Chiron

Issues

• Confusions about the basecalling labels

  #121 opened 5 months ago by chengyangWang-cell
  0

• chunks consensus

  #120 opened a year ago by F0nz0
  1

• Bad Results for Basecalling after Training own Model

  #116 opened a year ago by goevea
  0

• Biopython incompatible while installing Chiron using PIP

  #112 opened 3 years ago by Saranya-nanobiophotonics-lab
  1

• Cannot extract read_id attribute

  #93 opened 6 years ago by ardakdemir
  2

• How to train a similar model

  #110 opened 3 years ago by mrubio-chavarria
  1

• Quastions about the datasets

  #106 opened 4 years ago by bellstwohearted
  1

• Failed to start the call

  #109 opened 4 years ago by BJ-Chen-Eric
  1

• Chiron file depreciated?

  #108 opened 4 years ago by KFeye
  1

• How to make the evaluation to work on multiple cores

  #105 opened 5 years ago by drdivine
  1

• Raw data is not stored in Raw/Reads/Read_[read#] so new segments cannot be identified

  #85 opened 5 years ago by pdimens
  4

• mute adapter trimming

  #101 opened 5 years ago by ShaokangZhang
  1

• tensorflow - failed to call cuInit

  #99 opened 5 years ago by lab-rat-kid
  2

• Preset arguments

  #100 opened 5 years ago by lab-rat-kid
  1

• Not able to run on centos

  #98 opened 5 years ago by lab-rat-kid
  1

• Error when run base call step

  #96 opened 5 years ago by adaxidedakaonang
  3

• Assembly accuracy using racon

  #94 opened 5 years ago by ardakdemir
  6

• Fast5 files corresponding to the .signal files provided.

  #95 opened 5 years ago by ardakdemir
  1

• training data preparation

  #92 opened 6 years ago by WenxuZhang
  1

• Edit distance Calculation

  #91 opened 6 years ago by ardakdemir
  1

• Basecalling with DNA_default

  #90 opened 6 years ago by ardakdemir
  1

• Error when training model using raw signals

  #89 opened 6 years ago by ardakdemir
  2

• Confusion about labeled samples from the paper

  #88 opened 6 years ago by drewstone
  1

• Deprecated tenslorflow

  #83 opened 6 years ago by tarunaaggarwal
  15

• Source installation instructions not working

  #87 opened 6 years ago by jackwadden
  3

• Plans to update the example models?

  #86 opened 6 years ago by paradisebee
  1

• Add version info

  #84 opened 6 years ago by tarunaaggarwal
  2

• Parameter inconsistency in `read_raw_data_sets()`

  #82 opened 6 years ago by franrodalg
  1

• RNA model - no output

  #65 opened 6 years ago by jnaitsaada
  2

• Error with basecalling with non-default model

  #79 opened 6 years ago by damientully
  7

• Test data available in the paper Chiron

  #81 opened 6 years ago by qianlou
  1

• OP_REQUIRES failed at save_restore_v2_ops.cc:184

  #80 opened 6 years ago by hlitz
  3

• run entry.py call report error

  #78 opened 6 years ago by huangnengCSU
  1

• Attention decoder implementation

  #76 opened 6 years ago by nbathreya
  1

• which function is used to extract raw signal data from fast5

  #77 opened 6 years ago by huangnengCSU
  0

• attention.py

  #75 opened 6 years ago by nbathreya
  2

• base call failed after training

  #72 opened 6 years ago by lfaino
  7

• problems about accuarcies

  #71 opened 6 years ago by qhli1
  1

• Training Data

  #63 opened 7 years ago by pcjedi
  5

• question about trainning

  #70 opened 6 years ago by qhli1
  1

• No sequence in FASTQ output files when basecalling with own model

  #68 opened 7 years ago by kehey
  4

• appear at different stage: AttributeError: 'tqdm' object has no attribute 'pos'

  #64 opened 7 years ago by Huanle
  16

• basecall_group

  #67 opened 7 years ago by pcjedi
  1

• ImportError: No module named chiron

  #61 opened 7 years ago by pcjedi
  2

• Unknown exit perhaps related to tensorflow

  #60 opened 7 years ago by rbutleriii
  3

• AttributeError: 'tqdm' object has no attribute 'pos'

  #59 opened 7 years ago by rbutleriii
  2

• Did you train a BNLSTM model?

  #58 opened 7 years ago by qianlou
  2

• Parallel run & architecture warnings

  #56 opened 7 years ago by apredeus
  3

• chiron-0.3.tar.gz and Pypi have invalid setup.py

  #57 opened 7 years ago by genomematt
  1

• Function getcnnfeature()

  #54 opened 7 years ago by qianlou
  11