hasindu2008
I am currently working on domain-specific computer systems for ultra-efficient real-time genomic data processing
UNSW Sydney and Garvan Institute of Medical ResearchAustralia
hasindu2008's Stars
torvalds/linux
Linux kernel source tree
karpathy/llama2.c
Inference Llama 2 in one file of pure C
shenwei356/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
marvinpinto/action-automatic-releases
READONLY: Auto-generated mirror for https://github.com/marvinpinto/actions/tree/master/packages/automatic-releases
jts/nanopolish
Signal-level algorithms for MinION data
hasindu2008/f5c
Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
hiruna72/squigualiser
Visualise and analyse nanopore (ONT) raw signals
DecodeGenetics/Ratatosk
Hybrid error correction of long reads using colored de Bruijn graphs
hasindu2008/slow5tools
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
hasindu2008/squigulator
a tool for simulating nanopore raw signal data
nanoporetech/kmer_models
Predictive kmer models for development use
CMU-SAFARI/RawHash
RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).
Parsoa/SVDSS
Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
Psy-Fer/buttery-eel
The buttery eel - a slow5 guppy/dorado basecaller wrapper
haowenz/sigmap
A streaming method for mapping nanopore raw signals
Psy-Fer/blue-crab
crab go snap snap
Psy-Fer/interARTIC
InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
BonsonW/slow5curl
A library and tool for accessing remote BLOW5 files.
FeddrickAquino/sse2rvv
hasindu2008/sigtk
A simple toolkit for manipulating nanopore signal data
AnjanaSenanayake/DeepSelectNet
DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.
jts/mbtools
lrslab/nanoCEM
"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
bsaintjo/slow5-rs
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
hiruna72/slow5-dorado
A LibTorch Basecaller for Oxford Nanopore Reads
rnajena/read5
Wrapper to read fast5, slow5, blow5 and pod5 files.
hasindu2008/f5p
Lightweight job scheduler and daemon for nanopore data processing on a mini-cluster
hasindu2008/libabea
Adaptive Banded Event Alignment
hasindu2008/nci-scripts
PBS scripts for running nanopore genomics analyses on NCI Gadi
BonsonW/slorado
A simplified version of Dorado built on top of S/BLOW5 format.