Support for GUI dataset/channel selection, follow #165
Closed this issue · 5 comments
qin-yu commented
I plan to add these to GUI first then Napari. Do I need to watch out for something (cus I have limited experience with GUI)?
- Use case: Alyona wanted to find out if PlantSeg can be used for her images
- Her steps:
- Install PlantSeg and run all models on the same images
- Check which model give the best segmentation and probability map
- She finds my generic plant nuclei model is the only capable model, to my surprise
- But GUI can't give segmentation for some 2-channel network output
Maybe we should spend some time adding this to GUI.
wolny commented
hey @qin-yu, as disucssed with @lorenzocerrone let's implement it only for the multi-channel network output:
- In legacy GUI, we should add the option you've added in config
- In the napari GUI we should load the multi-channel output from the network in separate layers (one layer per channel) and the rest will work out of the box
qin-yu commented
I think I fixed this. Please check #184 @wolny @lorenzocerrone
lorenzocerrone commented
Yes we can close this
qin-yu commented
Wait a minute @lorenzocerrone It's not actually fixed until #184 is merged 🤣 I meant please review and see if it's fixed, though I thought it's fixed.
lorenzocerrone commented
Yeah sorry, I should have explained more :D
That part I have reviewed yesterday when we met and it was fine. But I will do the full PR review tomorrow :)