hhg7/defiant

clarify output format (for nucleotide_p.ptc_n.btn_GSE_original.tsv)

khl0798 opened this issue · 2 comments

I add the -E parameter when I run the Defiant.
image

Generate a file named after ### nucleotide_p.ptc_n.btn_GSE_original.tsv, I want to know what these Positive integer mean, as indicated in the box.
image

image

@hhg7 Many thanks.

by the way ,I am confused with the results;
Even though I tuned the parameters "-P 1 -c 1 -CpN 1 -d 1 " there was no DMR.
image
And I don't know what each column of this form means.
image

hhg7 commented

could you please provide a copy of your input file, 499/6 is impossible, every number should be in [0,1], this fraction is outside of that range