hypercompetent
Senior Scientist at the Allen Institute for Immunology. Building tools for transcriptomics and epigenomics.
Allen Institute for ImmunologySeattle, WA
hypercompetent's Stars
BurntSushi/xsv
A fast CSV command line toolkit written in Rust.
ast-grep/ast-grep
⚡A CLI tool for code structural search, lint and rewriting. Written in Rust
Nyandwi/machine_learning_complete
A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.
OpenGene/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
gadenbuie/tidyexplain
🤹♀ Animations of tidyverse verbs using R, the tidyverse, and gganimate
Teichlab/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
ctlab/fgsea
Fast Gene Set Enrichment Analysis
flekschas/jupyter-scatter
Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!
brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
pmelsted/bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
stephenturner/annotables
R data package for annotating/converting Gene IDs
38/d4-format
The D4 Quantitative Data Format
dpeerlab/SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
kundajelab/bpnet
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
sharlagelfand/twofunctionsmostdays
Sharing two #rstats functions, most days.
JiekaiLab/scTE
AntonioDeFalco/SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
HCN-Digital-Projects/landgrabu-data
Source data for the HCN investigation, "Land-Grab Universities"
lcmmichielsen/scHPL
biovault/nptsne
nptsne is a numpy compatible python binary package that offers a number of APIs for fast tSNE calculation.
LaoZZZZZ/bartender-1.1
This bartender version could handle arbitrary length of barcode
smaslova/AI-TAC
aertslab/popscle_helper_tools
Helper tools for popscle
gdkrmr/zarr-R
wrapping z5 in R
cellatlas/cellatlas
sankaranlab/mito-genotyping
Repo for scripts for Ludwig et al mtDNA genotyping
BIGslu/kimma
Kinship In Mixed Model Analysis of RNA-seq
mereulab/deepscore
Source code for DeepSCore
CompCy-lab/SketchKH
Distribution-Informed Sketching with Kernel Herding
khuranalab/DGTAC
Differential Gene Targets of Accessible Chromatin