iamgiddyaboutgit

iamgiddyaboutgit's Stars

• gothinkster/realworld

  "The mother of all demo apps" — Exemplary fullstack Medium.com clone powered by React, Angular, Node, Django, and many more

  Language:TypeScript80.9k1.5k5387.4k

• jax-ml/jax

  Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

  Language:Python30.9k3365.8k2.8k

• pyro-ppl/numpyro

  Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

  Language:Python2.4k53793246

• blackjax-devs/blackjax

  BlackJAX is a Bayesian Inference library designed for ease of use, speed and modularity.

  Language:Python86515325108

• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

  Language:Python52824734132

• assemblerflow/flowcraft

  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

  Language:Python2431810544

• rust-bio/rust-bio-tools

  A set of command line utilities based on Rust-Bio.

  Language:Rust189253823

• brianhie/viral-mutation

  Language modeling of viral evolution

  Language:Python1403544

• tseemann/nullarbor

  :floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

  Language:Perl1362129437

• jdidion/atropos

  An NGS read trimming tool that is specific, sensitive, and speedy. (production)

  Language:Python120911715

• marcelm/dnaio

  Efficiently read and write sequencing data from Python

  Language:Python606509

• telatin/bamtocov

  🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

  Language:Nim603126

• givasile/effector

  Effector - a Python package for global and regional effect methods

  Language:Jupyter Notebook55201

• sbslee/fuc

  Frequently used commands in bioinformatics

  Language:Python522375

• QIFEIDKN/STAGATE_pyG

  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framework)

  Language:Python49177

• causalvis/causalvis

  Language:Python42302

• clicumu/doepipeline

  A python package for optimizing processing pipelines using statistical design of experiments (DoE).

  Language:Python234152

• yulvil/chromosome-browser

  Visualize your DNA segments from gedmatch, ftdna, myheritage, 23andme

  Language:HTML22412

• geomarker-io/dep_index

  Community Material Deprivation Index

  Language:HTML15449

• Niaz-Imtiaz/Pan-Tompkins-Plus-Plus

  Language:Python15103

• mbudnins/parallel_transport_unfolding

  Parallel Transport Unfolding Codebase

  Language:Python14415

• Colelyman/kleuren

  Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees

  Language:C++12262

• transcript/COG

  Scripts and steps for making a consolidated COG database file for tools like DIAMOND.

  Language:Python11138

• grexor/pybio

  pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom genomes via FASTA/GTF inputs.

  Language:Python92251

• sanogenetics/puretabix

  Language:Python6343

• matbbDTU/probforecasteval

  Source code relevant for the paper "A practical guide to probabilistic forecast evaluation schemes"

  Language:R2201

• highlei/auspp

  Language:Perl100

• Matthew-Mosior/Basic-Variant-Parser

  A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.

  Language:Haskell1100