idekerlab/DCell

Issues

• Website Not Working

  #39 opened 4 years ago by TrevorPeyton
  1

• Script to Generate Topology Files

  #38 opened 4 years ago by pc2912
  0

• module 'cutorch' not found:No LuaRocks module found for cutorch

  #36 opened 6 years ago by cirosantilli
  0

• Clearing inputs allows simulate that does nothing.

  #33 opened 6 years ago by bdemchak
  1

• yeast->human

  #35 opened 6 years ago by animesh
  3

• Browser tab is wrong

  #32 opened 6 years ago by bdemchak
  1

• Can't seem to scroll down to buttons in Genotype Builder window

  #34 opened 6 years ago by muscovitebob
  2

• Add Example button

  #25 opened 7 years ago by keiono
  2

• Fix top page of the web site

  #23 opened 7 years ago by keiono
  1

• Rename Root to All Cells

  #31 opened 7 years ago by keiono
  0

• Use absolute value for node coloring

  #30 opened 7 years ago by keiono
  0

• Allow single gene deletion for Growth option

  #29 opened 7 years ago by keiono
  0

• All message for application initialization

  #28 opened 7 years ago by keiono
  0

• Add label for Root node in the Explain view

  #27 opened 7 years ago by keiono
  0

• Adjust edge color/width and make them more visible

  #26 opened 7 years ago by keiono
  0

• Remove edge selection from the main view after running simulation

  #24 opened 7 years ago by keiono
  0

• Ontology graph is empty

  #21 opened 7 years ago by bdemchak
  2

• Undefined terms in search widget

  #22 opened 7 years ago by bdemchak
  0

• atgo-style zoom should produce semantic-style labeling

  #19 opened 7 years ago by bdemchak
  1

• Do not allow same gene selection

  #15 opened 7 years ago by keiono
  1

• Create new color mapping for result DAG

  #13 opened 7 years ago by keiono
  1

• Add atgo-style zooming when term is selected in search bar

  #18 opened 7 years ago by bdemchak
  1

• Add option for query

  #7 opened 7 years ago by keiono
  1

• Remove size mapping from the result view

  #14 opened 7 years ago by keiono
  2

• Remove neuron view

  #16 opened 7 years ago by keiono
  1

• Update quick start guide

  #20 opened 7 years ago by bdemchak
  1

• Show a special node to count "other subsystems"

  #12 opened 7 years ago by michaelkyu
  0

• Adjust size of the side panel for small screen resolutions

  #11 opened 7 years ago by michaelkyu
  2

• Allow single gene selection for Growth option

  #9 opened 7 years ago by keiono
  1

• Neuron path display should match paper figures in some meaningful way

  #4 opened 7 years ago by bdemchak
  1

• In CLiXO display, node text labels are much to light

  #5 opened 7 years ago by bdemchak
  1

• Search freezes when entering term CLIXO:10651

  #6 opened 7 years ago by keiono
  2

• CLiXO search fails or spins forever

  #2 opened 7 years ago by bdemchak
  1

• In CLiXO view, how to search for SLA1

  #3 opened 7 years ago by bdemchak
  0

• Add PCA plot overlay

  #17 opened 7 years ago by keiono
  0

• Show PCA plots for subsystems

  #10 opened 7 years ago by michaelkyu
  0

• Replace Search Genes to Select Gene/Genotype

  #8 opened 7 years ago by keiono
  0

• Optimize Neural Network Switch Function

  #1 opened 8 years ago by keiono
  1